Evidence map›Paper›PMID 38737571›Full record

ArticleThe Lancet regional health. Europe2024

Evolution of invasive pneumococcal disease by serotype 3 in adults: a Spanish three-decade retrospective study.

Sara Calvo-Silveria, Aida González-Díaz, Inmaculada Grau, José María Marimón, Emilia Cercenado, M Dolores Quesada, Antonio Casabella, Nieves Larrosa, José Yuste, Dàmaris Berbel and 11 more

Abstract read
In one paragraph

Article in The Lancet regional health. Europe, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Persistence of vaccine-induced serotype-related pathology in invasive pneumococcal disease in children. Community of Madrid, 2007-2024.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2026
    Article
  6. Article
  7. Article
  8. Article
  9. The Lancet regional health. Western Pacific · 2026
    Article
  10. Journal of preventive medicine and hygiene · 2026
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Intra-serotype variation ofMicrobiology spectrum · 2025
    Article
  16. Article
  17. Article
  18. Fourier-transform infrared spectroscopy for rapidFrontiers in microbiology · 2025
    Article
  19. SARS-CoV-2 andFrontiers in cellular and infection microbiology · 2025
    Observational
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Sara Calvo-SilveriaMicrobiology Department, Hospital Universitari de Bellvitge - IDIBELL, L'Hospitalet de Llobregat, Spain.
Aida González-DíazMicrobiology Department, Hospital Universitari de Bellvitge - IDIBELL, L'Hospitalet de Llobregat, Spain.
Inmaculada GrauResearch Network for Respiratory Diseases (CIBERES), ISCIII, Madrid, Spain.
José María MarimónBiogipuzkoa, Infectious Diseases Area, Respiratory Infection and Antimicrobial Resistance Group, Microbiology Department, Hospital Donostia, Osakidetza Basque Health Service, Donostia - San Sebastian, Spain.
Emilia CercenadoResearch Network for Respiratory Diseases (CIBERES), ISCIII, Madrid, Spain.
M Dolores QuesadaMicrobiology Department, Clinical Laboratory North Metropolitan Area, Hospital Universitari Germans Trias i Pujol, UAB, Badalona, Spain.
Antonio CasabellaLaboratory of Microbiology, Hospital Universitari Parc Taulí, Sabadell, Spain.
Nieves LarrosaMicrobiology Department, Hospital Universitari Vall d'Hebron, UAB, Barcelona, Spain.
José YusteResearch Network for Respiratory Diseases (CIBERES), ISCIII, Madrid, Spain.
Dàmaris BerbelMicrobiology Department, Hospital Universitari de Bellvitge - IDIBELL, L'Hospitalet de Llobregat, Spain.
Marta AlonsoBiogipuzkoa, Infectious Diseases Area, Respiratory Infection and Antimicrobial Resistance Group, Microbiology Department, Hospital Donostia, Osakidetza Basque Health Service, Donostia - San Sebastian, Spain.
Fe TubauMicrobiology Department, Hospital Universitari de Bellvitge - IDIBELL, L'Hospitalet de Llobregat, Spain.
Sophie BelmanEarth Sciences Department, Barcelona Supercomputing Center - Centro Nacional de Supercomputación, Barcelona, Spain.
Irene Cadenas-JiménezMicrobiology Department, Hospital Universitari de Bellvitge - IDIBELL, L'Hospitalet de Llobregat, Spain.
Antonio J Martín-GalianoCore Scientific and Technical Units, Instituto de Salud Carlos III, Madrid, Spain.
M Ángeles DomínguezMicrobiology Department, Hospital Universitari de Bellvitge - IDIBELL, L'Hospitalet de Llobregat, Spain.
Sara MartíMicrobiology Department, Hospital Universitari de Bellvitge - IDIBELL, L'Hospitalet de Llobregat, Spain.
Josefina LiñaresMicrobiology Department, Hospital Universitari de Bellvitge - IDIBELL, L'Hospitalet de Llobregat, Spain.
Román PallarésResearch Network for Respiratory Diseases (CIBERES), ISCIII, Madrid, Spain.
Jordi CàmaraMicrobiology Department, Hospital Universitari de Bellvitge - IDIBELL, L'Hospitalet de Llobregat, Spain.
Carmen ArdanuyMicrobiology Department, Hospital Universitari de Bellvitge - IDIBELL, L'Hospitalet de Llobregat, Spain.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Invasive pneumococcal disease due to serotype 3 (S3-IPD) is associated with high mortality rates and long-term adverse effects. The introduction of the 13-valent pneumococcal conjugate vaccine (PCV13) into the Spanish paediatric immunisation programme has not led to a decrease in the adult S3-IPD. We aimed to analyse the incidence, clinical characteristics and genomics of S3-IPD in adults in Spain. Methods: Adult IPD episodes hospitalized in a Southern Barcelona hospital were prospectively collected (1994-2020). For genomic comparison, S3-IPD isolates from six Spanish hospitals (2008-2020) and historical isolates (1989-1993) were analysed by WGS (Illumina and/or MinION). Findings: From 1994 to 2020, 270 S3-IPD episodes were detected. When comparing pre-PCV (1994-2001) and late-PCV13 (2016-2020) periods, only modest changes in S3-IPD were observed (from 1.58 to 1.28 episodes per 100,000 inhabitants year). In this period, the incidence of the two main lineages shifted from 0.38 to 0.67 (CC180-GPSC12) and from 1.18 to 0.55 (CC260-GPSC83). The overall 30-day mortality remained high (24.1%), though a decrease was observed between the pre-PCV (32.4%; 95.0% CI, 22.0-45.0) and the late-PCV13 period (16.7%; 95.0% CI, 7.5-32.0) (p = 0.06). At the same time, comorbidities increased from 77.3% (95.0% CI, 65.0-86.0) to 85.7% (95.0% CI, 71.0-94.0) (p = 0.69). There were no differences in clinical characteristics or 30-day mortality between the two S3 lineages. Although both lineages were genetically homogeneous, the CC180-GPSC12 lineage presented a higher SNP density, a more open pan-genome, and a major presence of prophages and mobile genetic elements carrying resistance genes. Interpretation: Adult S3-IPD remained stable in our area over the study period despite PCV13 introduction in children. However, a clonal shift was observed. The decrease in mortality rates and the increase in comorbidities suggest a change in clinical management and overall population characteristics. The low genetic variability and absence of clinical differences between lineages highlight the role of the S3 capsule in the disease severity. Funding: This study has been funded by Instituto de Salud Carlos III (ISCIII) "PI18/00339", "PI21/01000", "INT22/00096", "FI22/00279", CIBER "CIBERES-CB06/06/0037", "CIBERINFEC-CB21/13/00009" and MSD grant "IISP 60168".

Indexed as

GenomicsSerotype 3Streptococcus pneumoniae

Identifiers

PMID38737571
PMCPMC11087702

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.