Evidence map›Paper›PMID 38737410›Full record

ArticleFrontiers in microbiology2024

Ultrastructural insights into cellular organization, energy storage and ribosomal dynamics of an ammonia-oxidizing archaeon from oligotrophic oceans.

Yangkai Zhou, An Yan, Jiawen Yang, Wei He, Shuai Guo, Yifan Li, Jing Wu, Yanchao Dai, Xijiang Pan, Dongyu Cui and 12 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Frontiers in microbiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Yangkai Zhou *Shenzhen Key Laboratory of Marine Archaea Geo-Omics, Department of Ocean Science and Engineering, Southern University of Science and Technology, Shenzhen, Guangdong, China.
An Yan *Cryo-Electron Microscopy Center, Southern University of Science and Technology, Shenzhen, Guangdong, China.
Jiawen Yang *Cryo-Electron Microscopy Center, Southern University of Science and Technology, Shenzhen, Guangdong, China.
Wei He *Shenzhen Key Laboratory of Marine Archaea Geo-Omics, Department of Ocean Science and Engineering, Southern University of Science and Technology, Shenzhen, Guangdong, China.
Shuai GuoCryo-Electron Microscopy Center, Southern University of Science and Technology, Shenzhen, Guangdong, China.
Yifan LiShenzhen Key Laboratory of Marine Archaea Geo-Omics, Department of Ocean Science and Engineering, Southern University of Science and Technology, Shenzhen, Guangdong, China.
Jing WuCryo-Electron Microscopy Center, Southern University of Science and Technology, Shenzhen, Guangdong, China.
Yanchao DaiShanghai NanoPort, Thermo Fisher Scientific Inc., Shanghai, China.
Xijiang PanShanghai NanoPort, Thermo Fisher Scientific Inc., Shanghai, China.
Dongyu CuiShenzhen Key Laboratory of Marine Archaea Geo-Omics, Department of Ocean Science and Engineering, Southern University of Science and Technology, Shenzhen, Guangdong, China.
Olivier PereiraShenzhen Key Laboratory of Marine Archaea Geo-Omics, Department of Ocean Science and Engineering, Southern University of Science and Technology, Shenzhen, Guangdong, China.
Wenkai TengShenzhen Key Laboratory of Marine Archaea Geo-Omics, Department of Ocean Science and Engineering, Southern University of Science and Technology, Shenzhen, Guangdong, China.
Ran BiShenzhen Key Laboratory of Marine Archaea Geo-Omics, Department of Ocean Science and Engineering, Southern University of Science and Technology, Shenzhen, Guangdong, China.
Songze ChenShenzhen Key Laboratory of Marine Archaea Geo-Omics, Department of Ocean Science and Engineering, Southern University of Science and Technology, Shenzhen, Guangdong, China.
Lu FanShenzhen Key Laboratory of Marine Archaea Geo-Omics, Department of Ocean Science and Engineering, Southern University of Science and Technology, Shenzhen, Guangdong, China.
Peiyi WangCryo-Electron Microscopy Center, Southern University of Science and Technology, Shenzhen, Guangdong, China.
Yan LiaoAustralian Institute for Microbiology & Infection, University of Technology Sydney, Ultimo, NSW, Australia.
Wei QinSchool of Biological Sciences and Institute for Environmental Genomics, University of Oklahoma, Norman, OK, United States.
Sen-Fang SuiCryo-Electron Microscopy Center, Southern University of Science and Technology, Shenzhen, Guangdong, China.
Yuanqing ZhuShenzhen Key Laboratory of Marine Archaea Geo-Omics, Department of Ocean Science and Engineering, Southern University of Science and Technology, Shenzhen, Guangdong, China.
Chuanlun ZhangShenzhen Key Laboratory of Marine Archaea Geo-Omics, Department of Ocean Science and Engineering, Southern University of Science and Technology, Shenzhen, Guangdong, China.
Zheng LiuCryo-Electron Microscopy Center, Southern University of Science and Technology, Shenzhen, Guangdong, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Introduction: Nitrososphaeria, formerly known as Methods: In this study, we combined spherical-chromatic-aberration-corrected cryo-electron tomography (cryo-ET), scanning transmission electron microscopy (STEM), and energy dispersive X-ray spectroscopy (EDS) to unveil the cellular organization and elemental composition of Results and Discussion: Our tomograms show the native ultrastructural morphology of SCM1 and one to several dense storage granules in the cytoplasm. STEM-EDS analysis identifies two types of storage granules: one type is possibly composed of polyphosphate and the other polyhydroxyalkanoate. With precise measurements using cryo-ET, we observed low quantity and density of ribosomes in SCM1 cells, which are in alignment with the documented slow growth of AOA in laboratory cultures. Collectively, these findings provide visual evidence supporting the resilience of AOA in the vast oligotrophic marine environment.

Indexed as

ammonia-oxidizing archaeoncryo-electron tomography (cryo-ET)energy dispersive X-ray spectroscopy (EDS)Nitrosopumilus maritimus SCM1scanning transmission electron microscopy (STEM)

Identifiers

PMID38737410
PMCPMC11082331

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.