Evidence map›Paper›PMID 38735878›Full record

ArticleFEBS open bio2024

Polysaccharide utilization loci encoded DUF1735 likely functions as membrane-bound spacer for carbohydrate active enzymes.

Lisanne Hameleers, Lucie A Gaenssle, Salvador Bertran-Llorens, Tjaard Pijning, Edita Jurak

Abstract read
In one paragraph

Article in FEBS open bio, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Novel Endo-β-Foods (Basel, Switzerland) · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Lisanne HameleersDepartment of Bioproduct Engineering, University of Groningen, The Netherlands.ORCID 0000-0002-8132-3500
Lucie A GaenssleDepartment of Bioproduct Engineering, University of Groningen, The Netherlands.
Salvador Bertran-LlorensDepartment of Chemical Engineering, University of Groningen, The Netherlands.ORCID 0000-0001-6514-7976
Tjaard PijningDepartment of Biomolecular X-ray Crystallography, Groningen Biomolecular Sciences and Biotechnology Institute (GBB), University of Groningen, The Netherlands.
Edita JurakDepartment of Bioproduct Engineering, University of Groningen, The Netherlands.ORCID 0000-0003-4253-4556

Funding

Rijksuniversiteit Groningen
6 · The paper itself

Abstract

Proteins featuring the Domain of Unknown Function 1735 are frequently found in Polysaccharide Utilization Loci, yet their role remains unknown. The domain and vicinity analyzer programs we developed mine the Kyoto Encyclopedia of Genes and Genomes and UniProt to enhance the functional prediction of DUF1735. Our datasets confirmed the exclusive presence of DUF1735 in Bacteroidota genomes, with Bacteroidetes thetaiotaomicron harboring 46 copies. Notably, 97.8% of DUF1735 are encoded in PULs, and 89% are N-termini of multimodular proteins featuring C-termini like Laminin_G_3, F5/8-typeC, and GH18 domains. Predominantly possessing a predicted lipoprotein signal peptide and sharing an immunoglobulin-like β-sandwich fold with the BACON domain and the N-termini of SusE/F, DUF1735 likely functions as N-terminal, membrane-bound spacer for diverse C-termini involved in PUL-mediated carbohydrate utilization.

Indexed as

PolysaccharidesBacterial ProteinsBacteroidetesCarbohydrate MetabolismBacterial ProteinsPolysaccharidesBacteroidetes‐Associated Carbohydrate‐binding often N‐terminal (BACON) domaindomain analyzer programdomain of unknown function 1735 (DUF1735)N‐terminal spacerpolysaccharide utilization loci (PULs)vicinity analyzer program

Identifiers

PMID38735878
PMCPMC11216935

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.