Evidence map›Paper›PMID 38734756›Full record

ArticleApplied microbiology and biotechnology2024

Activation of secondary metabolite gene clusters in Chaetomium olivaceum via the deletion of a histone deacetylase.

Peipei Zhao, Shengling Cao, Jiahui Wang, Jiaying Lin, Yunzeng Zhang, Chengwei Liu, Hairong Liu, Qingqing Zhang, Mengmeng Wang, Yiwei Meng and 4 more

Abstract read
In one paragraph

Article in Applied microbiology and biotechnology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Peipei Zhao *Biology Institute, Qilu University of Technology (Shandong Academy of Sciences), Jinan, 250103, Shandong, China.
Shengling Cao *Biology Institute, Qilu University of Technology (Shandong Academy of Sciences), Jinan, 250103, Shandong, China.
Jiahui WangBiology Institute, Qilu University of Technology (Shandong Academy of Sciences), Jinan, 250103, Shandong, China.
Jiaying LinBiology Institute, Qilu University of Technology (Shandong Academy of Sciences), Jinan, 250103, Shandong, China.
Yunzeng ZhangDepartment of Thoracic Surgery, Shandong Public Health Clinical Center, Jinan, 250013, Shandong, China.
Chengwei LiuKey Laboratory for Enzyme and Enzyme-Like Material Engineering of Heilongjiang, College of Life Science, Northeast Forestry University, Harbin, 150040, Heilongjiang, China.
Hairong LiuBiology Institute, Qilu University of Technology (Shandong Academy of Sciences), Jinan, 250103, Shandong, China.
Qingqing ZhangBiology Institute, Qilu University of Technology (Shandong Academy of Sciences), Jinan, 250103, Shandong, China.
Mengmeng WangBiology Institute, Qilu University of Technology (Shandong Academy of Sciences), Jinan, 250103, Shandong, China.
Yiwei MengBiology Institute, Qilu University of Technology (Shandong Academy of Sciences), Jinan, 250103, Shandong, China.
Xin YinBiology Institute, Qilu University of Technology (Shandong Academy of Sciences), Jinan, 250103, Shandong, China.
Jun QiBiology Institute, Qilu University of Technology (Shandong Academy of Sciences), Jinan, 250103, Shandong, China.
Lixin ZhangBiology Institute, Qilu University of Technology (Shandong Academy of Sciences), Jinan, 250103, Shandong, China.
Xuekui XiaBiology Institute, Qilu University of Technology (Shandong Academy of Sciences), Jinan, 250103, Shandong, China. xiaxk@sdas.org.ORCID http://orcid.org/0000-0001-9673-2828

Funding

Education and Industry Integration Innovation Pilot Project Qilu University of Technology (Shandong Academy of Sciences) 2022JBZ01-06Education and Industry Integration Innovation Pilot Project Qilu University of Technology (Shandong Academy of Sciences) 2022PX027Jinan Talent Project for Universities 2021GXRC062Jinan Talent Project for Universities 202228088Key innovation Project and Science, Education and Industry Integration Innovation Pilot Project Qilu University of Technology (Shandong Academy of Sciences) 2022PX051Key R&D Program of Shandong Province, China 2022SFGC0105Natural Science Foundation of Shandong Province ZR2021LSW022Natural Science Foundation of Shandong Province ZR2021QB173Natural Science Foundation of Shandong Province ZR2022QC186Research Project for Talents Qilu University of Technology (Shandong Academy of Sciences) 2023RCKY14Young Taishan Scholarship to Xuekui Xia tsqn202103100
6 · The paper itself

Abstract

Histone acetylation modifications in filamentous fungi play a crucial role in epigenetic gene regulation and are closely linked to the transcription of secondary metabolite (SM) biosynthetic gene clusters (BGCs). Histone deacetylases (HDACs) play a pivotal role in determining the extent of histone acetylation modifications and act as triggers for the expression activity of target BGCs. The genus Chaetomium is widely recognized as a rich source of novel and bioactive SMs. Deletion of a class I HDAC gene of Chaetomium olivaceum SD-80A, g7489, induces a substantial pleiotropic effect on the expression of SM BGCs. The C. olivaceum SD-80A ∆g7489 strain exhibited significant changes in morphology, sporulation ability, and secondary metabolic profile, resulting in the emergence of new compound peaks. Notably, three polyketides (A1-A3) and one asterriquinone (A4) were isolated from this mutant strain. Furthermore, our study explored the BGCs of A1-A4, confirming the function of two polyketide synthases (PKSs). Collectively, our findings highlight the promising potential of molecular epigenetic approaches for the elucidation of novel active compounds and their biosynthetic elements in Chaetomium species. This finding holds great significance for the exploration and utilization of Chaetomium resources. KEY POINTS: • Deletion of a class I histone deacetylase activated secondary metabolite gene clusters. • Three polyketides and one asterriquinone were isolated from HDAC deleted strain. • Two different PKSs were reported in C. olivaceum SD-80A.

Indexed as

ChaetomiumHistone DeacetylasesMultigene FamilyPolyketidesSecondary MetabolismBiosynthetic PathwaysEpigenesis, GeneticGene DeletionGene Expression Regulation, FungalPolyketide SynthasesHistone DeacetylasesPolyketidesPolyketide SynthasesBiosynthetic gene clustersChaetomium olivaceumEpigenetic regulationHDACPolyketide synthase

Identifiers

PMID38734756
PMCPMC11088548

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.