Evidence map›Paper›PMID 38733622›Full record

ArticleGenetics2024

TWISP: a transgenic worm for interrogating signal propagation in Caenorhabditis elegans.

Anuj Kumar Sharma, Francesco Randi, Sandeep Kumar, Sophie Dvali, Andrew M Leifer

Abstract read
In one paragraph

Article in Genetics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Anuj Kumar SharmaDepartment of Physics, Princeton University, Princeton, NJ 08544, USA.ORCID 0000-0001-5061-9731
Francesco RandiDepartment of Physics, Princeton University, Princeton, NJ 08544, USA.ORCID 0000-0002-6200-7254
Sandeep KumarPrinceton Neuroscience Institute, Princeton University, Princeton, NJ 08544, USA.ORCID 0000-0001-7181-232X
Sophie DvaliDepartment of Physics, Princeton University, Princeton, NJ 08544, USA.ORCID 0000-0001-8565-7148
Andrew M LeiferDepartment of Physics, Princeton University, Princeton, NJ 08544, USA.ORCID 0000-0002-5362-5093

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Ann E. Rougvie · 2012 to 2026
$7.5M
Probing Brain-wide Functional Connectivity During BehaviorDP2NS116768 · NINDS · PRINCETON UNIVERSITY · PI LEIFER, ANDREW MICHAEL · 2019 to 2019
$2.4M
Boehringer Ingelheim FondsCenter for the Physics of Biological Function PHY-1734030National Science FoundationNIH HHS P40 OD010440NINDS NIH HHS DP2 NS116768NINDS NIH HHS DP2-NS116768NSF CAREER Award IOS-1845137Simons Foundation SCGB #543003Swartz Fellowship for Theoretical NeuroscienceSwartz Foundation
6 · The paper itself

Abstract

Genetically encoded optical indicators and actuators of neural activity allow for all-optical investigations of signaling in the nervous system. But commonly used indicators, actuators, and expression strategies are poorly suited for systematic measurements of signal propagation at brain scale and cellular resolution. Large-scale measurements of the brain require indicators and actuators with compatible excitation spectra to avoid optical crosstalk. They must be highly expressed in every neuron but at the same time avoid lethality and permit the animal to reach adulthood. Their expression must also be compatible with additional fluorescent labels to locate and identify neurons, such as those in the NeuroPAL cell identification system. We present TWISP, a transgenic worm for interrogating signal propagation, that addresses these needs and enables optical measurements of evoked calcium activity at brain scale and cellular resolution in the nervous system of the nematode Caenorhabditis elegans. In every neuron we express a nonconventional optical actuator, the gustatory receptor homolog GUR-3 + PRDX-2, under the control of a drug-inducible system QF + hGR, and a calcium indicator GCAMP6s, in a background with additional fluorophores from the NeuroPAL cell ID system. We show that this combination, but not others tested, avoids optical crosstalk, creates strong expression in the adult, and generates stable transgenic lines for systematic measurements of signal propagation in the worm brain.

Indexed as

Animals, Genetically ModifiedCaenorhabditis elegansNeuronsAnimalsBrainCaenorhabditis elegans ProteinsCalciumCalcium SignalingSignal TransductionCaenorhabditis elegans ProteinsCalciumCaenorhabditis eleganscalcium imagingdexamethasonedrug-inducible gene expressionfunctional connectivityGUR-3neuronsoptogeneticsPRDX-2

Identifiers

PMID38733622
PMCPMC11228852

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.