Evidence map›Paper›PMID 38731656›Full record

ArticleFoods (Basel, Switzerland)2024

Bacterial Metabarcoding of Raw Palm Sap Samples from Bangladesh with Nanopore Sequencing.

Ágota Ábrahám, Md Nurul Islam, Zoltán Gazdag, Shahneaz Ali Khan, Sharmin Chowdhury, Gábor Kemenesi, Sazeda Akter

Abstract read
In one paragraph

Article in Foods (Basel, Switzerland), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Phenotypic and Genomic Insights intoFoods (Basel, Switzerland) · 2025
    Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Ágota ÁbrahámNational Laboratory of Virology, Szentágothai János Research Centre, University of Pécs, 7624 Pécs, Hungary.
Md Nurul IslamDepartment of Forest and Wildlife Ecology, University of Wisconsin-Madison, Madison, WI 53705, USA.ORCID 0000-0001-6849-4770
Zoltán GazdagInstitute of Biology, Faculty of Sciences, University of Pécs, 7622 Pécs, Hungary.ORCID 0000-0002-8531-4070
Shahneaz Ali KhanDepartment of Physiology Biochemistry and Pharmacology, Chattogram Veterinary and Animal Sciences University, Chattogram 4225, Bangladesh.ORCID 0000-0001-8383-1587
Sharmin ChowdhuryDepartment of Pathology and Parasitology, Faculty of Veterinary Medicine, One Health Institute, Chattogram 4202, Bangladesh.ORCID 0000-0002-8031-5998
Gábor KemenesiNational Laboratory of Virology, Szentágothai János Research Centre, University of Pécs, 7624 Pécs, Hungary.ORCID 0000-0001-9775-3065
Sazeda AkterDepartment of Medicine and Surgery, Faculty of Veterinary Medicine, Chattogram Veterinary and Animal Sciences University, Chattogram 4225, Bangladesh.ORCID 0000-0003-3128-1047

Funding

National Research, Development and Innovation Office, Hungary 2021-4.1.2-NEMZ_KI-2022-00020
6 · The paper itself

Abstract

The traditional practice of harvesting and processing raw date palm sap is not only culturally significant but also provides an essential nutritional source in South Asia. However, the potential for bacterial or viral contamination from animals and environmental sources during its collection remains a serious and insufficiently studied risk. Implementing improved food safety measures and collection techniques could mitigate the risk of these infections. Additionally, the adoption of advanced food analytical methods offers the potential to identify pathogens and uncover the natural bacterial diversity of these products. The advancement of next-generation sequencing (NGS) technologies, particularly nanopore sequencing, offers a rapid and highly mobile solution. In this study, we employed nanopore sequencing for the bacterial metabarcoding of a set of raw date palm sap samples collected without protective coverage against animals in Bangladesh in 2021. We identified several bacterial species with importance in the natural fermentation of the product and demonstrated the feasibility of this NGS method in the surveillance of raw palm sap products. We revealed two fermentation directions dominated by either

Indexed as

bacteriafood safetymicrobial communitymobile labNGS

Identifiers

PMID38731656
PMCPMC11083640

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.