Evidence map›Paper›PMID 38730618›Full record

ArticleCancers2024

Hypomethylation of ATP1A1 Is Associated with Poor Prognosis and Cancer Progression in Triple-Negative Breast Cancer.

Yesol Kim, Je Yeong Ko, Hyun Kyung Kong, Minyoung Lee, Woosung Chung, Sera Lim, Dasom Son, Sumin Oh, Jee Won Park, Do Yeon Kim and 5 more

Abstract read
In one paragraph

Article in Cancers, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Yesol KimDepartment of Biological Science, Research Institute of Women's Health, Sookmyung Women's University, Seoul 04310, Republic of Korea.
Je Yeong KoDepartment of Biological Science, Research Institute of Women's Health, Sookmyung Women's University, Seoul 04310, Republic of Korea.
Hyun Kyung KongDepartment of Biological Science, Research Institute of Women's Health, Sookmyung Women's University, Seoul 04310, Republic of Korea.
Minyoung LeeDepartment of Biological Science, Research Institute of Women's Health, Sookmyung Women's University, Seoul 04310, Republic of Korea.
Woosung ChungSamsung Genome Institute, Samsung Medical Center, Seoul 06351, Republic of Korea.
Sera LimDepartment of Biological Science, Research Institute of Women's Health, Sookmyung Women's University, Seoul 04310, Republic of Korea.
Dasom SonDepartment of Biological Science, Research Institute of Women's Health, Sookmyung Women's University, Seoul 04310, Republic of Korea.
Sumin OhDepartment of Biological Science, Research Institute of Women's Health, Sookmyung Women's University, Seoul 04310, Republic of Korea.
Jee Won ParkDepartment of Biological Science, Research Institute of Women's Health, Sookmyung Women's University, Seoul 04310, Republic of Korea.
Do Yeon KimDepartment of Biological Science, Research Institute of Women's Health, Sookmyung Women's University, Seoul 04310, Republic of Korea.
Minju LeeCancer Research Institute, Seoul National University College of Medicine, Seoul 03080, Republic of Korea.
Wonshik HanCancer Research Institute, Seoul National University College of Medicine, Seoul 03080, Republic of Korea.
Woong-Yang ParkSamsung Genome Institute, Samsung Medical Center, Seoul 06351, Republic of Korea.
Kyung Hyun YooDepartment of Biological Science, Research Institute of Women's Health, Sookmyung Women's University, Seoul 04310, Republic of Korea.ORCID 0000-0003-2172-5564
Jong Hoon ParkDepartment of Biological Science, Research Institute of Women's Health, Sookmyung Women's University, Seoul 04310, Republic of Korea.

Funding

National Research Foundation of Korea 2022R1A2C3002899National Research Foundation of Korea NRF-RS-2023-00207857
6 · The paper itself

Abstract

Dysregulated DNA methylation in cancer is critical in the transcription machinery associated with cancer progression. Triple-negative breast cancer (TNBC) is the most aggressive breast cancer subtype, but no treatment targeting TNBC biomarkers has yet been developed. To identify specific DNA methylation patterns in TNBC, methyl-binding domain protein 2 (MBD) sequencing data were compared in TNBC and the three other major breast cancer subtypes. Integrated analysis of DNA methylation and gene expression identified a gene set showing a correlation between DNA methylation and gene expression. ATPase Na+/K+-transporting subunit alpha 1 (ATP1A1) was found to be specifically hypomethylated in the coding sequence (CDS) region and to show increased expression in TNBC. The Cancer Genome Atlas (TCGA) database also showed that hypomethylation and high expression of ATP1A1 were strongly associated with poor survival in patients with TNBC. Furthermore, ATP1A1 knockdown significantly reduced the viability and tumor-sphere formation of TNBC cells. These results suggest that the hypomethylation and overexpression of ATP1A1 could be a prognostic marker in TNBC and that the manipulation of ATP1A1 expression could be a therapeutic target in this disease.

Indexed as

ATP1A1DNA methylationprognostic markertriple-negative breast cancer

Identifiers

PMID38730618
PMCPMC11083557

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.