Evidence map›Paper›PMID 38729995›Full record

ArticleBritish journal of cancer2024

Comprehensive genomic and transcriptomic characterization of high-grade gastro-entero-pancreatic neoplasms.

Valentina Angerilli, Giovanna Sabella, Michele Simbolo, Vincenzo Lagano, Giovanni Centonze, Marco Gentili, Alessandro Mangogna, Jorgelina Coppa, Giada Munari, Gianluca Businello and 7 more

Abstract read
In one paragraph

Article in British journal of cancer, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Valentina Angerilli *Department of Medicine (DIMED), University of Padua, Padua, Italy.
Giovanna Sabella *First Pathology Unit, Department of Pathology and Laboratory Medicine, Fondazione IRCCS Istituto Nazionale dei Tumori, Milan, Italy.
Michele Simbolo *Department of Diagnostics and Public Health, University and Hospital Trust of Verona, Verona, Italy.ORCID 0000-0002-0866-4499
Vincenzo LaganoFirst Pathology Unit, Department of Pathology and Laboratory Medicine, Fondazione IRCCS Istituto Nazionale dei Tumori, Milan, Italy.
Giovanni CentonzeFirst Pathology Unit, Department of Pathology and Laboratory Medicine, Fondazione IRCCS Istituto Nazionale dei Tumori, Milan, Italy.
Marco GentiliFirst Pathology Unit, Department of Pathology and Laboratory Medicine, Fondazione IRCCS Istituto Nazionale dei Tumori, Milan, Italy.
Alessandro MangognaInstitute of Pathological Anatomy, Department of Medicine (DMED), University of Udine, Udine, Italy.
Jorgelina CoppaHepatology and Hepato-Pancreatic-Biliary Surgery and Liver Transplantation, Fondazione IRCCS Istituto Nazionale Tumori, Milan, Italy.
Giada MunariDepartment of Medicine (DIMED), University of Padua, Padua, Italy.
Gianluca BusinelloDepartment of Medicine (DIMED), University of Padua, Padua, Italy.
Chiara BorgaDepartment of Medicine (DIMED), University of Padua, Padua, Italy.
Francesca SchiaviVeneto Institute of Oncology (IOV-IRCCS), Padua, Italy.
Sara PuscedduMedical Oncology and Hematology Department, Fondazione IRCCS Istituto Nazionale Tumori, Milan, Italy.
Rita LeporatiMedical Oncology and Hematology Department, Fondazione IRCCS Istituto Nazionale Tumori, Milan, Italy.ORCID 0000-0001-6671-9809
Simone OldaniMedical Oncology and Hematology Department, Fondazione IRCCS Istituto Nazionale Tumori, Milan, Italy.
Matteo FassanDepartment of Medicine (DIMED), University of Padua, Padua, Italy.ORCID 0000-0001-6515-5482
Massimo MilioneFirst Pathology Unit, Department of Pathology and Laboratory Medicine, Fondazione IRCCS Istituto Nazionale dei Tumori, Milan, Italy. massimo.milione@istitutotumori.mi.it.ORCID 0000-0002-1202-139X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundHigh-grade gastro-entero-pancreatic neoplasms (HG GEP-NENs) can be stratified according to their morphology and Ki-67 values into three prognostic classes: neuroendocrine tumors grade 3 (NETs G3), neuroendocrine carcinomas with Ki-67 < 55% (NECs <55) and NECs with Ki-67 ≥ 55% (NECs ≥55).

methodsWe analyzed a cohort of 49 HG GEP-NENs by targeted Next-Generation Sequencing (TrueSight Oncology 500), RNA-seq, and immunohistochemistry for p53, Rb1, SSTR-2A, and PD-L1.

resultsFrequent genomic alterations affected TP53 (26%), APC (20%), KRAS and MEN1 (both 11%) genes. NET G3 were enriched in MEN1 (p = 0.02) mutations, while both NECs groups were enriched in TP53 (p = 0.001), APC (p = 0.002) and KRAS (p = 0.02) mutations and tumors with TMB ≥ 10 muts/Mb (p = 0.01). No differentially expressed (DE) gene was found between NECs <55% and NECs ≥55%, while 1129 DE genes were identified between NET G3 and NECs. A slight enrichment of CD4

conclusionsThis study showed that GEP-NET G3 and GEP-NECs exhibit clear genomic and transcriptomic differences, differently from GEP-NECs <55% and GEP-NECs ≥55%, and provided molecular findings with prognostic and potentially predictive value.

Indexed as

Neuroendocrine TumorsPancreatic NeoplasmsTranscriptomeAdultAgedAged, 80 and overBiomarkers, TumorFemaleGenomicsHumansIntestinal NeoplasmsMaleMiddle AgedMutationNeoplasm GradingPrognosisBiomarkers, Tumor

Identifiers

PMID38729995
PMCPMC11231306

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.