Evidence map›Paper›PMID 38729993›Full record

ArticleNature communications2024

Regulation of Myc transcription by an enhancer cluster dedicated to pluripotency and early embryonic expression.

Lin Li-Bao, Covadonga Díaz-Díaz, Morena Raiola, Rocío Sierra, Susana Temiño, Francisco J Moya, Sandra Rodriguez-Perales, Elisa Santos, Giovanna Giovinazzo, Tore Bleckwehl and 3 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
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  5. Article
  6. Article
  7. Review
  8. Skin Development and Disease: A Molecular Perspective.Current issues in molecular biology · 2024
    Review
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Lin Li-BaoCardiovascular Regeneration Program, Centro Nacional de Investigaciones Cardiovasculares (CNIC), Madrid, Spain.
Covadonga Díaz-DíazCardiovascular Regeneration Program, Centro Nacional de Investigaciones Cardiovasculares (CNIC), Madrid, Spain.
Morena RaiolaCardiovascular Regeneration Program, Centro Nacional de Investigaciones Cardiovasculares (CNIC), Madrid, Spain.
Rocío SierraCardiovascular Regeneration Program, Centro Nacional de Investigaciones Cardiovasculares (CNIC), Madrid, Spain.
Susana TemiñoCardiovascular Regeneration Program, Centro Nacional de Investigaciones Cardiovasculares (CNIC), Madrid, Spain.
Francisco J MoyaMolecular Cytogenetics and Genome Editing Unit, Human Cancer Genetics Program, Centro Nacional de Investigaciones Oncológicas (CNIO), Madrid, Spain.
Sandra Rodriguez-PeralesMolecular Cytogenetics and Genome Editing Unit, Human Cancer Genetics Program, Centro Nacional de Investigaciones Oncológicas (CNIO), Madrid, Spain.ORCID http://orcid.org/0000-0001-7221-3636
Elisa SantosPluripotent Cell Technology Unit, Centro Nacional de Investigaciones Cardiovasculares, CNIC, Madrid, Spain.
Giovanna GiovinazzoCentro de Investigación Biomédica en Red de Enfermedades Cardiovasculares (CIBERCV), Madrid, Spain.ORCID http://orcid.org/0000-0002-5391-0441
Tore BleckwehlCenter for Molecular Medicine Cologne (CMMC), University of Cologne, Cologne, Germany.
Álvaro Rada-IglesiasInstitute of Biomedicine and Biotechnology of Cantabria (IBBTEC), CSIC/University of Cantabria, Santander, Spain.ORCID http://orcid.org/0000-0001-7137-1341
Francois SpitzDepartment of Human Genetics, The University of Chicago, Chicago, IL, USA.ORCID http://orcid.org/0000-0002-1960-829X
Miguel TorresCardiovascular Regeneration Program, Centro Nacional de Investigaciones Cardiovasculares (CNIC), Madrid, Spain. mtorres@cnic.es.ORCID http://orcid.org/0000-0003-0906-4767

Funding

TRAINING IN PSYCHONEUROIMMUNOLOGY, AIDS &DRUGS OF ABUSET32DA007245 · NIDA · UNIVERSITY OF SOUTH FLORIDA · PI FRIEDMAN, HERMAN · 1990 to 2001
$478k
Comunidad de Madrid P2022/BMD-7245 CARDIOBOOST-CMEC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020) SC1-BHC-07-2019Ministry of Economy and Competitiveness | Agencia Estatal de Investigación (Spanish Agencia Estatal de Investigación) CEX2020-001041-SMinistry of Economy and Competitiveness | Agencia Estatal de Investigación (Spanish Agencia Estatal de Investigación) PGC2018-096486-B-I00
6 · The paper itself

Abstract

MYC plays various roles in pluripotent stem cells, including the promotion of somatic cell reprogramming to pluripotency, the regulation of cell competition and the control of embryonic diapause. However, how Myc expression is regulated in this context remains unknown. The Myc gene lies within a ~ 3-megabase gene desert with multiple cis-regulatory elements. Here we use genomic rearrangements, transgenesis and targeted mutation to analyse Myc regulation in early mouse embryos and pluripotent stem cells. We identify a topologically-associated region that homes enhancers dedicated to Myc transcriptional regulation in stem cells of the pre-implantation and early post-implantation embryo. Within this region, we identify elements exclusively dedicated to Myc regulation in pluripotent cells, with distinct enhancers that sequentially activate during naive and formative pluripotency. Deletion of pluripotency-specific enhancers dampens embryonic stem cell competitive ability. These results identify a topologically defined enhancer cluster dedicated to early embryonic expression and uncover a modular mechanism for the regulation of Myc expression in different states of pluripotency.

Indexed as

Enhancer Elements, GeneticGene Expression Regulation, DevelopmentalPluripotent Stem CellsProto-Oncogene Proteins c-mycAnimalsEmbryo, MammalianEmbryonic Stem CellsFemaleMaleMiceTranscription, GeneticMyc protein, mouseProto-Oncogene Proteins c-myc

Identifiers

PMID38729993
PMCPMC11087473

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.