Evidence map›Paper›PMID 38728007›Full record

ArticleThe Journal of cell biology2024

A RAB7A phosphoswitch coordinates Rubicon Homology protein regulation of Parkin-dependent mitophagy.

Dan A Tudorica, Bishal Basak, Alexia S Puerta Cordova, Grace Khuu, Kevin Rose, Michael Lazarou, Erika L F Holzbaur, James H Hurley

Abstract read
In one paragraph

Article in The Journal of cell biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Rubicon modulates neuroimmune responses following traumatic brain injury.bioRxiv : the preprint server for biology · 2026
    Article
  5. Review
  6. Review
  7. Rab14 promotes Parkin-mediated mitophagy.Molecular biology of the cell · 2025
    Article
  8. Article
  9. Review
  10. Article
  11. Targeting mitophagy in neurodegenerative diseases.Nature reviews. Drug discovery · 2025
    Review
  12. Review
  13. Review
  14. Review
  15. Article
  16. Review
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Dan A TudoricaAligning Science Across Parkinson's (ASAP) Collaborative Research Network , Chevy Chase, MD, USA.ORCID 0000-0003-0337-5150
Bishal BasakAligning Science Across Parkinson's (ASAP) Collaborative Research Network , Chevy Chase, MD, USA.ORCID 0000-0003-4496-4162
Alexia S Puerta CordovaCalifornia Institute for Quantitative Biosciences, University of California, Berkeley, Berkeley, CA, USA.ORCID 0000-0003-2455-9776
Grace KhuuAligning Science Across Parkinson's (ASAP) Collaborative Research Network , Chevy Chase, MD, USA.ORCID 0000-0002-2550-0605
Kevin RoseCalifornia Institute for Quantitative Biosciences, University of California, Berkeley, Berkeley, CA, USA.ORCID 0000-0002-9373-4147
Michael LazarouAligning Science Across Parkinson's (ASAP) Collaborative Research Network , Chevy Chase, MD, USA.ORCID 0000-0003-2150-5545
Erika L F HolzbaurAligning Science Across Parkinson's (ASAP) Collaborative Research Network , Chevy Chase, MD, USA.ORCID 0000-0001-5389-4114
James H HurleyAligning Science Across Parkinson's (ASAP) Collaborative Research Network , Chevy Chase, MD, USA.ORCID 0000-0001-5054-5445

Funding

The UC Berkeley MARC: Shaping the Next Generation of Scientific LeadersT34GM145535 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI Ellen A Lumpkin · 2022 to 2026
$839k
Aligning Science Across Parkinson's ASAP-000350NIGMS NIH HHS T34 GM145535
6 · The paper itself

Abstract

Activation of PINK1 and Parkin in response to mitochondrial damage initiates a response that includes phosphorylation of RAB7A at Ser72. Rubicon is a RAB7A binding negative regulator of autophagy. The structure of the Rubicon:RAB7A complex suggests that phosphorylation of RAB7A at Ser72 would block Rubicon binding. Indeed, in vitro phosphorylation of RAB7A by TBK1 abrogates Rubicon:RAB7A binding. Pacer, a positive regulator of autophagy, has an RH domain with a basic triad predicted to bind an introduced phosphate. Consistent with this, Pacer-RH binds to phosho-RAB7A but not to unphosphorylated RAB7A. In cells, mitochondrial depolarization reduces Rubicon:RAB7A colocalization whilst recruiting Pacer to phospho-RAB7A-positive puncta. Pacer knockout reduces Parkin mitophagy with little effect on bulk autophagy or Parkin-independent mitophagy. Rescue of Parkin-dependent mitophagy requires the intact pRAB7A phosphate-binding basic triad of Pacer. Together these structural and functional data support a model in which the TBK1-dependent phosphorylation of RAB7A serves as a switch, promoting mitophagy by relieving Rubicon inhibition and favoring Pacer activation.

Indexed as

Autophagy-Related ProteinsMitophagyProtein Serine-Threonine Kinasesrab7 GTP-Binding ProteinsUbiquitin-Protein LigasesHEK293 CellsHeLa CellsHumansIntracellular Signaling Peptides and ProteinsMitochondriaPhosphorylationProtein BindingAutophagy-Related ProteinsIntracellular Signaling Peptides and Proteinsparkin proteinProtein Serine-Threonine Kinasesrab7 GTP-Binding Proteinsrab7 GTP-binding proteins, humanRUBCN protein, humanTBK1 protein, humanUbiquitin-Protein Ligases

Identifiers

PMID38728007
PMCPMC11090050

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.