Evidence map›Paper›PMID 38726305›Full record

ArticleJournal of open source software2023

SPyCi-PDB: A modular command-line interface for back-calculating experimental datatypes of protein structures.

Zi Hao Liu, Oufan Zhang, João M C Teixeira, Jie Li, Teresa Head-Gordon, Julie D Forman-Kay

Abstract read
In one paragraph

Article in Journal of open source software, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Zi Hao LiuMolecular Medicine Program, Hospital for Sick Children, Toronto, Ontario M5G 0A4, Canada.ORCID 0000-0002-8357-8507
Oufan ZhangPitzer Center for Theoretical Chemistry, University of California, Berkeley, California 94720-1460, USA.
João M C TeixeiraDepartment of Biomedical Sciences, University of Padova, Padova 35131, Italy.ORCID 0000-0002-9113-0622
Jie LiPitzer Center for Theoretical Chemistry, University of California, Berkeley, California 94720-1460, USA.ORCID 0000-0002-4727-1786
Teresa Head-GordonPitzer Center for Theoretical Chemistry, University of California, Berkeley, California 94720-1460, USA.ORCID 0000-0003-0025-8987
Julie D Forman-KayMolecular Medicine Program, Hospital for Sick Children, Toronto, Ontario M5G 0A4, Canada.ORCID 0000-0001-8265-972X

Funding

Calculating Ensembles of Discrete Dynamic Complexes and Condensed States of Intrinsically Disordered ProteinsR01GM127627 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI Teresa L. Head-Gordon · 2018 to 2026
$2.1M
NIGMS NIH HHS R01 GM127627
6 · The paper itself

Abstract

PubMed holds no abstract for this paper.

Identifiers

PMID38726305
PMCPMC11081106

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.