Evidence map›Paper›PMID 38724749›Full record

ArticleGenetica2024

Comparative genomic analysis reveals expansion of the DnaJ gene family in Lagerstroemia indica and its members response to salt stress.

Jin Qin, Xiaoyu Hou, Huanzhe Wang, Tianyi Yuan, Hui Wei, Guoyuan Liu, Yanhong Chen, Bolin Lian, Fei Zhong, Jian Zhang and 1 more

Abstract read
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In one paragraph

Article in Genetica, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Jin QinSchool of Life Sciences, Nantong University, Nantong, 226019, Jiangsu, China.
Xiaoyu HouSchool of Life Sciences, Nantong University, Nantong, 226019, Jiangsu, China.
Huanzhe WangSchool of Life Sciences, Nantong University, Nantong, 226019, Jiangsu, China.
Tianyi YuanSchool of Life Sciences, Nantong University, Nantong, 226019, Jiangsu, China.
Hui WeiSchool of Life Sciences, Nantong University, Nantong, 226019, Jiangsu, China.
Guoyuan LiuSchool of Life Sciences, Nantong University, Nantong, 226019, Jiangsu, China.
Yanhong ChenSchool of Life Sciences, Nantong University, Nantong, 226019, Jiangsu, China.ORCID http://orcid.org/0000-0002-9744-0314
Bolin LianSchool of Life Sciences, Nantong University, Nantong, 226019, Jiangsu, China.ORCID http://orcid.org/0000-0002-4426-8151
Fei ZhongSchool of Life Sciences, Nantong University, Nantong, 226019, Jiangsu, China.ORCID http://orcid.org/0000-0003-3313-0904
Jian ZhangSchool of Life Sciences, Nantong University, Nantong, 226019, Jiangsu, China. yjnkyy@ntu.edu.cn.
Chunmei YuSchool of Life Sciences, Nantong University, Nantong, 226019, Jiangsu, China. ychmei@ntu.edu.cn.ORCID http://orcid.org/0000-0002-2377-854X

Funding

Forestry Science and Technology of Central Financing Su[2021]TG03)Innovative project for college students in Jiangsu Province 202310304105Y
6 · The paper itself

Abstract

DnaJs/Hsp40s/JPDs are obligate co-chaperones of heat shock proteins (Hsp70), performing crucial biological functions within organisms. A comparative genome analysis of four genomes (Vitis vinifera, Eucalyptus grandis, Lagerstroemia indica, and Punica granatum) revealed that the DnaJ gene family in L. indica has undergone expansion, although not to the extent observed in P. granatum. Inter-genome collinearity analysis of four plants indicates that members belonging to Class A and B are more conserved during evolution. In L. indica, the expanded members primarily belong to Class-C. Tissue expression patterns and the biochemical characterization of LiDnaJs further suggested that DnaJs may be involved in numerous biological processes in L. indica. Transcriptome and qPCR analyses of salt stressed leaves identified at least ten LiDnaJs that responded to salt stress. In summary, we have elucidated the expansion mechanism of the LiDnaJs, which is attributed to a recent whole-genome triplication. This research laid the foundation for functional analysis of LiDnaJs and provides gene resources for breeding salt-tolerant varieties of L. indica.

Indexed as

Gene Expression Regulation, PlantLagerstroemiaMultigene FamilyPlant ProteinsSalt StressGenome, PlantGenomicsHSP40 Heat-Shock ProteinsPhylogenyHSP40 Heat-Shock ProteinsPlant ProteinsHeat shock proteinJDP/DnaJ gene familyLagerstroemia indica L.LiDnaJSalt stress

Identifiers

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.