Evidence map›Paper›PMID 38722918›Full record

ArticlePLoS genetics2024

LRK-1/LRRK2 and AP-3 regulate trafficking of synaptic vesicle precursors through active zone protein SYD-2/Liprin-α.

Sravanthi S P Nadiminti, Shirley B Dixit, Neena Ratnakaran, Anushka Deb, Sneha Hegde, Sri Padma Priya Boyanapalli, Sierra Swords, Barth D Grant, Sandhya P Koushika

Abstract read
In one paragraph

Article in PLoS genetics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Biogenesis and reformation of synaptic vesicles.The Journal of physiology · 2025
    Review
  5. Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Sravanthi S P NadimintiDepartment of Biological Sciences, Tata Institute of Fundamental Research, Mumbai, Maharashtra, India.ORCID 0000-0002-5359-0759
Shirley B DixitDepartment of Biological Sciences, Tata Institute of Fundamental Research, Mumbai, Maharashtra, India.
Neena RatnakaranDepartment of Biological Sciences, Tata Institute of Fundamental Research, Mumbai, Maharashtra, India.ORCID 0000-0003-4848-4684
Anushka DebDepartment of Biological Sciences, Tata Institute of Fundamental Research, Mumbai, Maharashtra, India.ORCID 0009-0001-5698-7137
Sneha HegdeDepartment of Biological Sciences, Tata Institute of Fundamental Research, Mumbai, Maharashtra, India.
Sri Padma Priya BoyanapalliDepartment of Biological Sciences, Tata Institute of Fundamental Research, Mumbai, Maharashtra, India.
Sierra SwordsDepartment of Molecular Biology and Biochemistry, Rutgers University, Piscataway, New Jersey, United States of America.ORCID 0000-0001-7831-7233
Barth D GrantDepartment of Molecular Biology and Biochemistry, Rutgers University, Piscataway, New Jersey, United States of America.ORCID 0000-0002-5943-8336
Sandhya P KoushikaDepartment of Biological Sciences, Tata Institute of Fundamental Research, Mumbai, Maharashtra, India.ORCID 0000-0002-1742-7356

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Aric L Daul, Ann E. Rougvie · 2012 to 2026
$7.5M
Molecular regulation of endosome fission during endocytic recyclingR01GM135326 · NIGMS · RUTGERS, THE STATE UNIV OF N.J. · PI Barth Demian Grant · 2020 to 2026
$2.6M
NIGMS NIH HHS R01 GM135326NIH HHS P40 OD010440
6 · The paper itself

Abstract

Synaptic vesicle proteins (SVps) are transported by the motor UNC-104/KIF1A. We show that SVps travel in heterogeneous carriers in C. elegans neuronal processes, with some SVp carriers co-transporting lysosomal proteins (SV-lysosomes). LRK-1/LRRK2 and the clathrin adaptor protein complex AP-3 play a critical role in the sorting of SVps and lysosomal proteins away from each other at the SV-lysosomal intermediate trafficking compartment. Both SVp carriers lacking lysosomal proteins and SV-lysosomes are dependent on the motor UNC-104/KIF1A for their transport. In lrk-1 mutants, both SVp carriers and SV-lysosomes can travel in axons in the absence of UNC-104, suggesting that LRK-1 plays an important role to enable UNC-104 dependent transport of synaptic vesicle proteins. Additionally, LRK-1 acts upstream of the AP-3 complex and regulates its membrane localization. In the absence of the AP-3 complex, the SV-lysosomes become more dependent on the UNC-104-SYD-2/Liprin-α complex for their transport. Therefore, SYD-2 acts to link upstream trafficking events with the transport of SVps likely through its interaction with the motor UNC-104. We further show that the mistrafficking of SVps into the dendrite in lrk-1 and apb-3 mutants depends on SYD-2, likely by regulating the recruitment of the AP-1/UNC-101. SYD-2 acts in concert with AP complexes to ensure polarized trafficking & transport of SVps.

Indexed as

Adaptor Protein Complex 3Caenorhabditis elegansCaenorhabditis elegans ProteinsLysosomesNerve Tissue ProteinsSynaptic VesiclesAnimalsAxonsIntercellular Signaling Peptides and ProteinsIntracellular Signaling Peptides and ProteinsKinesinsLeucine-Rich Repeat Serine-Threonine Protein Kinase-2NeuronsProtein Serine-Threonine KinasesProtein TransportAdaptor Protein Complex 3Caenorhabditis elegans ProteinsIntercellular Signaling Peptides and ProteinsIntracellular Signaling Peptides and ProteinsKinesinsLeucine-Rich Repeat Serine-Threonine Protein Kinase-2LRK-1 protein, C elegansNerve Tissue ProteinsProtein Serine-Threonine KinasesSYD-2 protein, C elegansUNC-104 protein, C elegans

Identifiers

PMID38722918
PMCPMC11081264

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.