Evidence map›Paper›PMID 38722179›Full record

ArticleApplied and environmental microbiology2024

The elimination of two restriction enzyme genes allows for electroporation-based transformation and CRISPR-Cas9-based base editing in the non-competent Gram-negative bacterium

Masahito Ishikawa, Katsutoshi Hori

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Masahito IshikawaDepartment of Frontier Bioscience, Faculty of Bioscience, Nagahama Institute of Bio-Science and Technology, Nagahama, Shiga, Japan.ORCID 0000-0001-6390-1031
Katsutoshi HoriDepartment of Biomolecular Engineering, Graduate School of Engineering, Nagoya University, Furo-cho, Nagoya, Japan.ORCID 0000-0003-1994-3124

Funding

MEXT | Japan Science and Technology Agency (JST) JPMJPR20K2
6 · The paper itself

Abstract

Environmental isolates are promising candidates for new chassis of synthetic biology because of their inherent capabilities, which include efficiently converting a wide range of substrates into valuable products and resilience to environmental stresses; however, many remain genetically intractable and unamenable to established genetic tools tailored for model bacteria.

Indexed as

AcinetobacterCRISPR-Cas SystemsElectroporationGene EditingBacterial ProteinsDNA Restriction EnzymesTransformation, BacterialBacterial ProteinsDNA Restriction Enzymesbacterial chassisnon-competent bacterianon-model bacteriarestriction-modification system

Identifiers

PMID38722179
PMCPMC11218613

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.