Evidence map›Paper›PMID 38721661›Full record

ArticleAmerican journal of physiology. Renal physiology2024

Cilia-deficient renal tubule cells are primed for injury with mitochondrial defects and aberrant tryptophan metabolism.

Xiaofeng Zuo, Brennan Winkler, Kasey Lerner, Daria V Ilatovskaya, Aleksandra S Zamaro, Yujing Dang, Yanhui Su, Peifeng Deng, Wayne Fitzgibbon, Jessica Hartman and 2 more

Abstract read
In one paragraph

Article in American journal of physiology. Renal physiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Review
  5. The exocyst in ciliogenesis.Renal failure · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Xiaofeng ZuoDepartment of Medicine, Medical University of South Carolina, Charleston, South Carolina, United States.
Brennan WinklerDepartment of Medicine, Medical University of South Carolina, Charleston, South Carolina, United States.ORCID 0000-0002-8340-9017
Kasey LernerDepartment of Medicine, Medical University of South Carolina, Charleston, South Carolina, United States.
Daria V IlatovskayaDepartment of Physiology, Medical College of Georgia, Augusta University, Augusta, Georgia, United States.ORCID 0000-0003-4832-4170
Aleksandra S ZamaroDepartment of Physiology, Medical College of Georgia, Augusta University, Augusta, Georgia, United States.ORCID 0000-0002-9938-7203
Yujing DangDepartment of Medicine, Medical University of South Carolina, Charleston, South Carolina, United States.
Yanhui SuDepartment of Medicine, Medical University of South Carolina, Charleston, South Carolina, United States.
Peifeng DengDepartment of Medicine, Medical University of South Carolina, Charleston, South Carolina, United States.
Wayne FitzgibbonDepartment of Medicine, Medical University of South Carolina, Charleston, South Carolina, United States.
Jessica HartmanDepartment of Biochemistry and Molecular Biology, Medical University of South Carolina, Charleston, South Carolina, United States.
Kwon Moo ParkDepartment of Anatomy, School of Medicine, Kyungpook National University, Daegu, Republic of Korea.ORCID 0000-0002-1617-5919
Joshua H LipschutzDepartment of Medicine, Medical University of South Carolina, Charleston, South Carolina, United States.ORCID 0000-0002-7787-8503

Funding

UAB Recessive PKD Research and Translational Core CenterP30DK074038 · NIDDK · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI YODER, BRADLEY K. · 2005 to 2019
$16.6M
The exocyst in ciliogenesis and cystogenesisI01BX000820 · VA · RALPH H JOHNSON VA MEDICAL CENTER · PI JOSHUA H LIPSCHUTZ · 2011 to 2026
–
BLRD VA I01 BX000820CSRD VA I01 CX002391NIDDK NIH HHS P30 DK074038
6 · The paper itself

Abstract

The exocyst and Ift88 are necessary for primary ciliogenesis. Overexpression of Exoc5 (OE), a central exocyst component, resulted in longer cilia and enhanced injury recovery. Mitochondria are involved in acute kidney injury (AKI). To investigate cilia and mitochondria, basal respiration and mitochondrial maximal and spare respiratory capacity were measured in Exoc5 OE, Exoc5 knockdown (KD), Exoc5 ciliary targeting sequence mutant (CTS-mut), control Madin-Darby canine kidney (MDCK), Ift88 knockout (KO), and Ift88 rescue cells. In Exoc5 KD, Exoc5 CTS-mut, and Ift88 KO cells, these parameters were decreased. In Exoc5 OE and Ift88 rescue cells they were increased. Reactive oxygen species were higher in Exoc5 KD, Exoc5 CTS-mut, and Ift88 KO cells compared with Exoc5 OE, control, and Ift88 rescue cells. By electron microscopy, mitochondria appeared abnormal in Exoc5 KD, Exoc5 CTS-mut, and Ift88 KO cells. A metabolomics screen of control, Exoc5 KD, Exoc5 CTS-mut, Exoc5 OE, Ift88 KO, and Ift88 rescue cells showed a marked increase in tryptophan levels in Exoc5 CTS-mut (113-fold) and Exoc5 KD (58-fold) compared with control cells. A 21% increase was seen in Ift88 KO compared with rescue cells. In Exoc5 OE compared with control cells, tryptophan was decreased 59%. To determine the effects of ciliary loss on AKI, we generated proximal tubule-specific Exoc5 and Ift88 KO mice. These mice had loss of primary cilia, decreased mitochondrial ATP synthase, and increased tryptophan in proximal tubules with greater injury following ischemia-reperfusion. These data indicate that cilia-deficient renal tubule cells are primed for injury with mitochondrial defects in tryptophan metabolism.

Indexed as

Acute Kidney InjuryCiliaMitochondriaTryptophanAnimalsDogsKidney TubulesMadin Darby Canine Kidney CellsMiceMice, KnockoutReactive Oxygen SpeciesTumor Suppressor ProteinsReactive Oxygen SpeciesTg737Rpw protein, mouseTryptophanTumor Suppressor Proteinsacute kidney injuryexocystmitochondriaoxidative stressprimary cilia

Identifiers

PMID38721661
PMCPMC11390130

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.