Evidence map›Paper›PMID 38720975›Full record

ArticleRSC advances2024

Alchemical approach performance in calculating the ligand-binding free energy.

Son Tung Ngo, Quynh Mai Thai, Trung Hai Nguyen, Nguyen Ngoc Tuan, T Ngoc Han Pham, Huong T T Phung, Duong Tuan Quang

Abstract read
In one paragraph

Article in RSC advances, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Son Tung NgoLaboratory of Biophysics, Institute for Advanced Study in Technology, Ton Duc Thang University Ho Chi Minh City Vietnam ngosontung@tdtu.edu.vn.ORCID https://orcid.org/0000-0003-1034-1768
Quynh Mai ThaiLaboratory of Biophysics, Institute for Advanced Study in Technology, Ton Duc Thang University Ho Chi Minh City Vietnam ngosontung@tdtu.edu.vn.ORCID https://orcid.org/0000-0003-2149-5690
Trung Hai NguyenLaboratory of Biophysics, Institute for Advanced Study in Technology, Ton Duc Thang University Ho Chi Minh City Vietnam ngosontung@tdtu.edu.vn.
Nguyen Ngoc TuanFaculty of Applied Sciences, Ton Duc Thang University Ho Chi Minh City Vietnam.
T Ngoc Han PhamNTT Hi-Tech Institute, Nguyen Tat Thanh University Ho Chi Minh City Vietnam.
Huong T T PhungNTT Hi-Tech Institute, Nguyen Tat Thanh University Ho Chi Minh City Vietnam.ORCID https://orcid.org/0000-0001-5702-4597
Duong Tuan QuangDepartment of Chemistry, Hue University Hue City Thua Thien Hue Province Vietnam dtquang@hueui.edu.vn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Alchemical binding free energy calculations are one of the most accurate methods for estimating ligand-binding affinity. Assessing the accuracy of the approach over protein targets is one of the most interesting issues. The free energy difference of binding between a protein and a ligand was calculated

Identifiers

PMID38720975
PMCPMC11078002

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.