Evidence map›Paper›PMID 38720110›Full record

ArticleCommunications biology2024

Fusobacterium nucleatum infection modulates the transcriptome and epigenome of HCT116 colorectal cancer cells in an oxygen-dependent manner.

Barath Udayasuryan, Zirui Zhou, Raffae N Ahmad, Polina Sobol, Chengyu Deng, Tam T D Nguyen, Shivanie Kodikalla, Ryan Morrison, Ishan Goswami, Daniel J Slade and 2 more

Abstract read
In one paragraph

Article in Communications biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed.

  1. Metabolic effects of periodontal pathogensJournal of Taibah University Medical Sciences · 2026
    Article
  2. Article
  3. Fusobacterium nucleatum, succinate signaling, and immunotherapy resistance in colorectal cancer: clinical relevance and translational opportunities.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2026
    Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Review
  12. Metaplasia Enables Stomach Colonization bybioRxiv : the preprint server for biology · 2025
    Article
  13. Review
  14. Article
  15. Gut microbes · 2025
    Article
  16. Article
  17. Review
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Barath Udayasuryan *School of Biomedical Engineering and Sciences, Virginia Tech-Wake Forest University, Blacksburg, VA, USA.ORCID 0000-0003-1543-7873
Zirui Zhou *Department of Chemical Engineering, Virginia Tech, Blacksburg, VA, USA.
Raffae N AhmadSchool of Biomedical Engineering and Sciences, Virginia Tech-Wake Forest University, Blacksburg, VA, USA.ORCID 0000-0002-5538-0982
Polina SobolSchool of Biomedical Engineering and Sciences, Virginia Tech-Wake Forest University, Blacksburg, VA, USA.
Chengyu DengDepartment of Chemical Engineering, Virginia Tech, Blacksburg, VA, USA.
Tam T D NguyenDepartment of Biochemistry, Virginia Tech, Blacksburg, VA, USA.
Shivanie KodikallaSchool of Biomedical Engineering and Sciences, Virginia Tech-Wake Forest University, Blacksburg, VA, USA.
Ryan MorrisonSchool of Biomedical Engineering and Sciences, Virginia Tech-Wake Forest University, Blacksburg, VA, USA.ORCID 0000-0002-9257-5447
Ishan GoswamiSchool of Biomedical Engineering and Sciences, Virginia Tech-Wake Forest University, Blacksburg, VA, USA.
Daniel J SladeDepartment of Biochemistry, Virginia Tech, Blacksburg, VA, USA.
Scott S VerbridgeSchool of Biomedical Engineering and Sciences, Virginia Tech-Wake Forest University, Blacksburg, VA, USA.
Chang LuDepartment of Chemical Engineering, Virginia Tech, Blacksburg, VA, USA. changlu@vt.edu.ORCID 0000-0003-0181-5888

Funding

Droplet microfluidic technology for single-cell epigenomic and multi-omic profilingR01GM143940 · NIGMS · VIRGINIA POLYTECHNIC INST AND ST UNIV · PI LU, CHANG · 2021 to 2024
$1.3M
A low-input microfluidic ChIRP-seq technology for studying endogenous lncRNA bindingR01GM141096 · NIGMS · VIRGINIA POLYTECHNIC INST AND ST UNIV · PI LU, CHANG · 2021 to 2024
$1.1M
A Tissue Engineering Approach to Analyzing Host-Microbe Interactions in CancerR21CA238630 · NCI · VIRGINIA POLYTECHNIC INST AND ST UNIV · PI SLADE, DANIEL J, VERBRIDGE, SCOTT S · 2019 to 2020
$359k
NCI NIH HHS R21 CA238630NIGMS NIH HHS R01 GM141096NIGMS NIH HHS R01 GM143940
6 · The paper itself

Abstract

Fusobacterium nucleatum, a gram-negative oral bacterium, has been consistently validated as a strong contributor to the progression of several types of cancer, including colorectal (CRC) and pancreatic cancer. While previous in vitro studies have shown that intracellular F. nucleatum enhances malignant phenotypes such as cell migration, the dependence of this regulation on features of the tumor microenvironment (TME) such as oxygen levels are wholly uncharacterized. Here we examine the influence of hypoxia in facilitating F. nucleatum invasion and its effects on host responses focusing on changes in the global epigenome and transcriptome. Using a multiomic approach, we analyze epigenomic alterations of H3K27ac and global transcriptomic alterations sustained within a hypoxia and normoxia conditioned CRC cell line HCT116 at 24 h following initial infection with F. nucleatum. Our findings reveal that intracellular F. nucleatum activates signaling pathways and biological processes in host cells similar to those induced upon hypoxia conditioning in the absence of infection. Furthermore, we show that a hypoxic TME favors F. nucleatum invasion and persistence and therefore infection under hypoxia may amplify malignant transformation by exacerbating the effects induced by hypoxia alone. These results motivate future studies to investigate host-microbe interactions in tumor tissue relevant conditions that more accurately define parameters for targeted cancer therapies.

Indexed as

Colorectal NeoplasmsEpigenomeFusobacterium InfectionsFusobacterium nucleatumOxygenTranscriptomeGene Expression Regulation, NeoplasticHCT116 CellsHumansTumor MicroenvironmentOxygen

Identifiers

PMID38720110
PMCPMC11079022

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.