Evidence map›Paper›PMID 38720076›Full record

ArticleNature2024

Genome organization around nuclear speckles drives mRNA splicing efficiency.

Prashant Bhat, Amy Chow, Benjamin Emert, Olivia Ettlin, Sofia A Quinodoz, Mackenzie Strehle, Yodai Takei, Alex Burr, Isabel N Goronzy, Allen W Chen and 8 more

Abstract read
In one paragraph

Article in Nature, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 114 papers.

0numbers the graph read from it
0cells of the map it votes in
114citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

114 citing papers in PubMed.

  1. Exchange dynamics and kinetic control of gene regulation complexes.Nature reviews. Molecular cell biology · 2026
    Review
  2. Article
  3. Review
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  8. Review
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  17. Review
  18. mMolecular medicine reports · 2026
    Review
  19. Predicting human mRNA isoform levels from site-specific splicing kineticsbioRxiv : the preprint server for biology · 2026
    Article
  20. Article

54 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

18 authors.

Prashant BhatDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA.ORCID http://orcid.org/0000-0003-3832-4871
Amy ChowDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA.
Benjamin EmertDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA.
Olivia EttlinDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA.ORCID http://orcid.org/0000-0002-9243-9752
Sofia A QuinodozDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA.
Mackenzie StrehleDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA.ORCID http://orcid.org/0000-0003-1410-8701
Yodai TakeiDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA.ORCID http://orcid.org/0000-0002-7226-5185
Alex BurrDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA.ORCID http://orcid.org/0000-0003-2741-9592
Isabel N GoronzyDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA.
Allen W ChenDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA.ORCID http://orcid.org/0000-0002-6351-2578
Wesley HuangDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA.ORCID http://orcid.org/0000-0002-6483-8297
Jose Lorenzo M FerrerDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA.ORCID http://orcid.org/0000-0002-3405-7596
Elizabeth SoehalimDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA.
Say-Tar GohDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA.
Tara ChariDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA.ORCID http://orcid.org/0000-0002-6953-4313
Delaney K SullivanDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA.
Mario R BlancoDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA.
Mitchell GuttmanDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA. mguttman@caltech.edu.ORCID http://orcid.org/0000-0003-4748-9352

Funding

UCLA-Caltech Medical Scientist Training ProgramT32GM008042 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI AJIJOLA, OLUJIMI A, DAWSON, DAVID WAYNE · 1985 to 2023
$29.9M
PREDOCTORAL TRAINING IN BIOLOGY AND CHEMISTRYT32GM007616 · NIGMS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI STERNBERG, PAUL WARREN · 1985 to 2019
$22.9M
Dynamics of chromosome organization and chromatin states in single cellsU01DK127420 · NIDDK · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI CAI, LONG, ELOWITZ, MICHAEL B · 2020 to 2024
$5.7M
How phase-separation in the nucleus organizes 3D spatial assembly and gene regulationR01DA053178 · NIDA · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI GUTTMAN, MITCHELL · 2020 to 2024
$5.4M
Determining the function and mechanism of the MALAT1 long non-coding RNA in co-transcriptional splicingF30CA247447 · NCI · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI BHAT, PRASHANT · 2020 to 2021
$102k
NCI NIH HHS F30 CA247447NIDA NIH HHS R01 DA053178NIDDK NIH HHS U01 DK127420NIGMS NIH HHS T32 GM007616NIGMS NIH HHS T32 GM008042
6 · The paper itself

Abstract

The nucleus is highly organized, such that factors involved in the transcription and processing of distinct classes of RNA are confined within specific nuclear bodies

Indexed as

GenomeNuclear SpecklesRNA, MessengerRNA PrecursorsRNA SplicingSpliceosomesAnimalsGenesHuman Embryonic Stem CellsHumansMaleMiceMouse Embryonic Stem CellsTranscription, GeneticRNA, MessengerRNA Precursors

Identifiers

PMID38720076
PMCPMC11164319

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.