Evidence map›Paper›PMID 38720073›Full record

ArticleNature2024

The intrinsic substrate specificity of the human tyrosine kinome.

Tomer M Yaron-Barir, Brian A Joughin, Emily M Huntsman, Alexander Kerelsky, Daniel M Cizin, Benjamin M Cohen, Amit Regev, Junho Song, Neil Vasan, Ting-Yu Lin and 26 more

Abstract read
In one paragraph

Article in Nature, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 98 papers.

0numbers the graph read from it
0cells of the map it votes in
98citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

98 citing papers in PubMed.

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  18. Phosphoproteome-derived peptide libraries for deep specificity profiling of phosphatases and phospholyases.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  19. Article
  20. Article

38 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

36 authors.

Tomer M Yaron-BarirMeyer Cancer Center, Weill Cornell Medicine, New York, NY, USA.ORCID 0000-0001-6574-7314
Brian A JoughinDavid H. Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA, USA.ORCID 0000-0003-1022-9450
Emily M HuntsmanMeyer Cancer Center, Weill Cornell Medicine, New York, NY, USA.
Alexander KerelskyMeyer Cancer Center, Weill Cornell Medicine, New York, NY, USA.
Daniel M CizinMeyer Cancer Center, Weill Cornell Medicine, New York, NY, USA.
Benjamin M CohenMeyer Cancer Center, Weill Cornell Medicine, New York, NY, USA.
Amit RegevMeyer Cancer Center, Weill Cornell Medicine, New York, NY, USA.
Junho SongMeyer Cancer Center, Weill Cornell Medicine, New York, NY, USA.
Neil VasanDepartment of Medicine, Division of Hematology/Oncology, Columbia University Irving Medical Center, New York, NY, USA.ORCID 0000-0003-1779-484X
Ting-Yu LinMeyer Cancer Center, Weill Cornell Medicine, New York, NY, USA.
Jose M OrozcoDepartment of Cell Biology, Harvard Medical School, Boston, MA, USA.
Christina SchoenherrCancer Research United Kingdom Scotland Centre, Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh, UK.ORCID 0000-0002-0983-6168
Cari SagumDepartment of Epigenetics and Molecular Carcinogenesis, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Mark T BedfordDepartment of Epigenetics and Molecular Carcinogenesis, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.ORCID 0000-0002-8899-1050
R Max WynnDepartment of Biochemistry, University of Texas Southwestern Medical Center, Dallas, TX, USA.ORCID 0000-0002-1879-2136
Shih-Chia TsoDepartment of Biochemistry, University of Texas Southwestern Medical Center, Dallas, TX, USA.
David T ChuangDepartment of Biochemistry, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Lei LiSchool of Health and Life Sciences, University of Health and Rehabilitation Sciences, Qingdao, China.
Shawn S-C LiDepartment of Biochemistry, Schulich School of Medicine and Dentistry, Western University, London, Canada.ORCID 0000-0003-3610-9035
Pau CreixellDavid H. Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA, USA.
Konstantin KrismerDavid H. Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA, USA.ORCID 0000-0001-8994-3416
Mina TakegamiDavid H. Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA, USA.ORCID 0000-0002-3744-1577
Harin LeeDepartment Of Bioinformatics, Cell Signaling Technology, Danvers, MA, USA.
Bin ZhangDepartment Of Bioinformatics, Cell Signaling Technology, Danvers, MA, USA.
Jingyi LuDepartment Of Bioinformatics, Cell Signaling Technology, Danvers, MA, USA.
Ian CossentinoDepartment Of Bioinformatics, Cell Signaling Technology, Danvers, MA, USA.ORCID 0000-0002-1179-2045
Sean D LandryDepartment Of Bioinformatics, Cell Signaling Technology, Danvers, MA, USA.
Mohamed UdumanDepartment Of Bioinformatics, Cell Signaling Technology, Danvers, MA, USA.
John BlenisMeyer Cancer Center, Weill Cornell Medicine, New York, NY, USA.ORCID 0000-0003-3622-2337
Olivier ElementoEnglander Institute for Precision Medicine, Institute for Computational Biomedicine, Weill Cornell Medicine, New York, NY, USA.ORCID 0000-0002-8061-9617
Margaret C FrameCancer Research United Kingdom Scotland Centre, Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh, UK.ORCID 0000-0001-5882-1942
Peter V HornbeckDepartment Of Bioinformatics, Cell Signaling Technology, Danvers, MA, USA.
Lewis C CantleyMeyer Cancer Center, Weill Cornell Medicine, New York, NY, USA. Lewis_Cantley@dfci.harvard.edu.ORCID 0000-0002-1298-7653
Benjamin E TurkDepartment of Pharmacology, Yale School of Medicine, New Haven, CT, USA. ben.turk@yale.edu.ORCID 0000-0001-9275-4069
Michael B YaffeDavid H. Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA, USA. myaffe@mit.edu.ORCID 0000-0002-9547-3251
Jared L JohnsonMeyer Cancer Center, Weill Cornell Medicine, New York, NY, USA. jaredl_johnson@dfci.harvard.edu.ORCID 0000-0003-1802-6527

Funding

The RAS and P13K Pathways in Pancreatic AdenocarcinomaP01CA117969 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI KALLURI, RAGHU · 2006 to 2025
$41.7M
Tuberous Sclerosis-Pathway and PathogenesisP01CA120964 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI David J. Kwiatkowski · 2007 to 2026
$35.9M
Role of Phosphoinositides and Protein Kinases in the control of Cancer MetabolismR35CA197588 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI LEWIS C. CANTLEY · 2016 to 2026
$10.2M
Protein Kinase Signaling in the Genotoxic Stress ResponseR35ES028374 · NIEHS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI YAFFE, MICHAEL B · 2017 to 2024
$3.9M
RNA-Binding Proteins as Molecular Integrators that Control the Response of HGSOC to Ant-Cancer TherapiesR01CA226898 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BURGE, CHRISTOPHER B, HEMANN, MICHAEL · 2019 to 2023
$2.7M
Modeling human phosphorylation networks through kinome-wide profilingR01GM104047 · NIGMS · YALE UNIVERSITY · PI TURK, BENJAMIN E, YAFFE, MICHAEL B · 2013 to 2017
$2.4M
Mechanisms of selective signaling in MAP kinase phosphorylation networksR01GM135331 · NIGMS · YALE UNIVERSITY · PI TURK, BENJAMIN E · 2020 to 2023
$1.4M
NCI NIH HHS P01 CA117969NCI NIH HHS P01 CA120964NCI NIH HHS R01 CA226898NCI NIH HHS R35 CA197588NIEHS NIH HHS R35 ES028374NIGMS NIH HHS R01 GM104047NIGMS NIH HHS R01 GM135331
6 · The paper itself

Abstract

Phosphorylation of proteins on tyrosine (Tyr) residues evolved in metazoan organisms as a mechanism of coordinating tissue growth

Indexed as

PhosphotyrosineProtein-Tyrosine KinasesSubstrate SpecificityTyrosineAmino Acid MotifsAnimalsEvolution, MolecularHumansMass SpectrometryPhosphoproteinsPhosphorylationProteomeProteomicsSignal Transductionsrc Homology DomainsPhosphoproteinsPhosphotyrosineProtein-Tyrosine KinasesProteomeTyrosine

Identifiers

PMID38720073
PMCPMC11136658

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.