Evidence map›Paper›PMID 38719921›Full record

ArticleScientific reports2024

A fungi hotspot deep in the ocean: explaining the presence of Gjaerumia minor in equatorial Pacific bathypelagic waters.

Massimo C Pernice, Irene Forn, Ramiro Logares, Ramon Massana

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Massimo C PerniceDepartament de Biologia Marina I Oceanografia, Institut de Ciències del Mar-CSIC, Barcelona, Spain. pernice@icm.csic.es.
Irene FornDepartament de Biologia Marina I Oceanografia, Institut de Ciències del Mar-CSIC, Barcelona, Spain.
Ramiro LogaresDepartament de Biologia Marina I Oceanografia, Institut de Ciències del Mar-CSIC, Barcelona, Spain.ORCID 0000-0002-8213-0604
Ramon MassanaDepartament de Biologia Marina I Oceanografia, Institut de Ciències del Mar-CSIC, Barcelona, Spain.ORCID 0000-0001-9172-5418

Funding

Ministry of Economy and Competitiveness | Agência de Investigação Estadual (Agencia Estatal de Investigación de España) CTM2016-75083-RMinistry of Economy and Competitiveness | Agência de Investigação Estadual (Agencia Estatal de Investigación de España) PID2019-105775RB-I00Ministry of Economy and Competitiveness | Agencia Estatal de Investigación de España (Agencia Estatal de Investigación de España) CSD2008–00077
6 · The paper itself

Abstract

A plant parasite associated with the white haze disease in apples, the Basidiomycota Gjaerumia minor, has been found in most samples of the global bathypelagic ocean. An analysis of environmental 18S rDNA sequences on 12 vertical profiles of the Malaspina 2010 expedition shows that the relative abundance of this cultured species increases with depth while its distribution is remarkably different between the deep waters of the Pacific and Atlantic oceans, being present in higher concentrations in the former. This is evident from sequence analysis and a microscopic survey with a species-specific newly designed TSA-FISH probe. Several hints point to the hypothesis that G. minor is transported to the deep ocean attached to particles, and the absence of G. minor in bathypelagic Atlantic waters could then be explained by the absence of this organism in surface waters of the equatorial Atlantic. The good correlation of G. minor biomass with Apparent Oxygen Utilization, recalcitrant carbon and free-living prokaryotic biomass in South Pacific waters, together with the identification of the observed cells as yeasts and not as resting spores (teliospores), point to the possibility that once arrived at deep layers this species keeps on growing and thriving.

Indexed as

BasidiomycotaAtlantic OceanDNA, FungalDNA, RibosomalPacific OceanPhylogenyRNA, Ribosomal, 18SSeawaterDNA, FungalDNA, RibosomalRNA, Ribosomal, 18S

Identifiers

PMID38719921
PMCPMC11079054

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.