Evidence map›Paper›PMID 38719795›Full record

ArticleNature communications2024

Precise immunofluorescence canceling for highly multiplexed imaging to capture specific cell states.

Kosuke Tomimatsu, Takeru Fujii, Ryoma Bise, Kazufumi Hosoda, Yosuke Taniguchi, Hiroshi Ochiai, Hiroaki Ohishi, Kanta Ando, Ryoma Minami, Kaori Tanaka and 9 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Emerging technologies in the spatial proteomics landscape.Analytical and bioanalytical chemistry · 2026
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Kosuke Tomimatsu *Division of Transcriptomics, Medical Institute of Bioregulation, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka, 812-0054, Japan.
Takeru Fujii *Division of Transcriptomics, Medical Institute of Bioregulation, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka, 812-0054, Japan.
Ryoma BiseDepartment of Advanced Information Technology, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka, 819-0395, Japan.
Kazufumi HosodaAnsanga Lab, 31, Yamadaoka, Suita, Osaka, 565-0871, Japan.ORCID http://orcid.org/0000-0002-8043-0216
Yosuke TaniguchiDepartment of Medicinal Sciences, Faculty of Pharmaceutical Sciences, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka, 812-0054, Japan.ORCID http://orcid.org/0000-0002-8985-3629
Hiroshi OchiaiDivision of Gene Expression Dynamics, Medical Institute of Bioregulation, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka, 812-0054, Japan.ORCID http://orcid.org/0000-0002-2200-1325
Hiroaki OhishiDivision of Gene Expression Dynamics, Medical Institute of Bioregulation, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka, 812-0054, Japan.ORCID http://orcid.org/0000-0001-6672-4093
Kanta AndoDivision of Transcriptomics, Medical Institute of Bioregulation, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka, 812-0054, Japan.
Ryoma MinamiDivision of Transcriptomics, Medical Institute of Bioregulation, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka, 812-0054, Japan.
Kaori TanakaDivision of Transcriptomics, Medical Institute of Bioregulation, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka, 812-0054, Japan.
Taro TachibanaDepartment of Chemistry and Bioengineering, Osaka Metropolitan University, Osaka, 558-8585, Japan.
Seiichi MoriCancer Precision Medicine Center, Japanese Foundation for Cancer Research, 3-8-31 Ariake, Koto-ku, Tokyo, 135-8550, Japan.
Akihito HaradaDivision of Transcriptomics, Medical Institute of Bioregulation, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka, 812-0054, Japan.
Kazumitsu MaeharaDivision of Transcriptomics, Medical Institute of Bioregulation, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka, 812-0054, Japan.ORCID http://orcid.org/0000-0002-2933-5176
Masao NagasakiDivision of Biomedical Information Analysis, Medical Institute of Bioregulation, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka, 812-0054, Japan.ORCID http://orcid.org/0000-0002-4292-8785
Seiichi UchidaDepartment of Advanced Information Technology, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka, 819-0395, Japan.ORCID http://orcid.org/0000-0001-8592-7566
Hiroshi KimuraCell Biology Center, Institute of Innovative Research, Tokyo Institute of Technology, 4259 Nagatsuta, Midori-ku, Yokohama, 226-8503, Japan.ORCID http://orcid.org/0000-0003-0854-083X
Masashi NaritaCancer Research UK Cambridge Institute, Li Ka Shing Center, University of Cambridge, Cambridge, CB2 0RE, UK.ORCID http://orcid.org/0000-0001-7764-577X
Yasuyuki OhkawaDivision of Transcriptomics, Medical Institute of Bioregulation, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka, 812-0054, Japan. yohkawa@bioreg.kyushu-u.ac.jp.ORCID http://orcid.org/0000-0001-6440-9954

Funding

Cancer Research UK (CRUK) C9545/A29580Japan Agency for Medical Research and Development (AMED) JP22ama121017j0001Japan Agency for Medical Research and Development (AMED) JP22ama221513Japan Agency for Medical Research and Development (AMED) JP23ama121020Japan Agency for Medical Research and Development (AMED) JP23fk0210138MEXT | Japan Society for the Promotion of Science (JSPS) JP18H05528MEXT | Japan Society for the Promotion of Science (JSPS) JP20H05609MEXT | Japan Society for the Promotion of Science (JSPS) JP21H05292MEXT | Japan Society for the Promotion of Science (JSPS) JP22H02609MEXT | Japan Society for the Promotion of Science (JSPS) JP22H03538MEXT | Japan Society for the Promotion of Science (JSPS) JP22H04676MEXT | Japan Society for the Promotion of Science (JSPS) JP22H04696MEXT | Japan Society for the Promotion of Science (JSPS) JP22J20655MEXT | Japan Society for the Promotion of Science (JSPS) JP22K15084MEXT | Japan Society for the Promotion of Science (JSPS) JP22K19275MEXT | Japan Society for the Promotion of Science (JSPS) JP22K19314MEXT | Japan Society for the Promotion of Science (JSPS) JP23H00372MEXT | Japan Society for the Promotion of Science (JSPS) JP23H02394MEXT | Japan Society for the Promotion of Science (JSPS) JP23H04286MEXT | Japan Society for the Promotion of Science (JSPS) JP23H04288MEXT | Japan Society for the Promotion of Science (JSPS) JP24H02326MEXT | JST | Core Research for Evolutional Science and Technology (CREST) JPMJCR23N3MEXT | JST | Precursory Research for Embryonic Science and Technology (PRESTO) JPMJPR2026RCUK | Biotechnology and Biological Sciences Research Council (BBSRC) BB/S013466/1RCUK | Biotechnology and Biological Sciences Research Council (BBSRC) BB/T013486/1
6 · The paper itself

Abstract

Cell states are regulated by the response of signaling pathways to receptor ligand-binding and intercellular interactions. High-resolution imaging has been attempted to explore the dynamics of these processes and, recently, multiplexed imaging has profiled cell states by achieving a comprehensive acquisition of spatial protein information from cells. However, the specificity of antibodies is still compromised when visualizing activated signals. Here, we develop Precise Emission Canceling Antibodies (PECAbs) that have cleavable fluorescent labeling. PECAbs enable high-specificity sequential imaging using hundreds of antibodies, allowing for reconstruction of the spatiotemporal dynamics of signaling pathways. Additionally, combining this approach with seq-smFISH can effectively classify cells and identify their signal activation states in human tissue. Overall, the PECAb system can serve as a comprehensive platform for analyzing complex cell processes.

Indexed as

Fluorescent Antibody TechniqueAnimalsAntibodiesFluorescent DyesHumansIn Situ Hybridization, FluorescenceMicroscopy, FluorescenceSignal TransductionSingle Molecule ImagingAntibodiesFluorescent Dyes

Identifiers

PMID38719795
PMCPMC11078938

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.