Evidence map›Paper›PMID 38718258›Full record

ArticleJournal of chemical theory and computation2024

Binding of Phosphate Species to Ca

Basak Koca Fındık, Majid Jafari, Lin Frank Song, Zhen Li, Viktorya Aviyente, Kenneth M Merz

Abstract read
In one paragraph

Article in Journal of chemical theory and computation, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Mg(OH)ChemistryOpen · 2026
    Article
  3. Article
  4. Article
  5. Recent Developments in Amber Biomolecular Simulations.Journal of chemical information and modeling · 2025
    Article
  6. Article
  7. Article
  8. Article
  9. Simulating Metal-Imidazole Complexes.Journal of chemical theory and computation · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Basak Koca FındıkDepartment of Chemistry, Bogazici University, Bebek, Istanbul 34342, Turkey.ORCID 0000-0002-5213-9712
Majid JafariDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, Michigan 48824, United States.ORCID 0000-0001-5233-6882
Lin Frank SongBiochemical and Biophysical Systems Group, Lawrence Livermore National Laboratory, Livermore, California 94550, United States.ORCID 0000-0002-1854-5215
Zhen LiDepartment of Chemistry, Michigan State University, East Lansing, Michigan 48824, United States.ORCID 0000-0001-7947-3887
Viktorya AviyenteDepartment of Chemistry, Bogazici University, Bebek, Istanbul 34342, Turkey.ORCID 0000-0001-9430-4096
Kenneth M MerzDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, Michigan 48824, United States.ORCID 0000-0001-9139-5893

Funding

Modeling Transition Metal Ion Binding to ProteinsR01GM130641 · NIGMS · MICHIGAN STATE UNIVERSITY · PI KENNETH M. MERZ · 2019 to 2026
$2.5M
NIGMS NIH HHS R01 GM130641
6 · The paper itself

Abstract

Phosphate derivatives and their interaction with metal cations are involved in many important biological phenomena, so an accurate characterization of the phosphate-metal interaction is necessary to properly understand the role of phosphate-metal contacts in mediating biological function. Herein, we improved the standard 12-6 Lennard-Jones (LJ) potential via the usage of the 12-6-4 LJ model, which incorporates ion-induced dipole interactions. Via parameter scanning, we fine-tuned the 12-6-4 LJ polarizability values to obtain accurate absolute binding free energies for the phosphate anions H

Identifiers

PMID38718258
PMCPMC11137831

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.