Evidence map›Paper›PMID 38717937›Full record

ArticleThe Journal of infectious diseases2024

Identification of 2 Novel Subtypes of Hepatitis C Virus Genotype 8 and a Potential New Genotype Successfully Treated With Direct Acting Antivirals.

Jean L Mbisa, Zena Lapp, David F Bibby, Laura T Phillips, Carmen F Manso, Simon Packer, Ruth Simmons, Kathryn Harris, Jaiganesh Mohan, Lalitha Chinnappan and 2 more

Abstract read
In one paragraph

Article in The Journal of infectious diseases, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Article
  6. Epigenetic Mechanisms Involved in Hcv Infection and Human HCC.International journal of molecular sciences · 2025
    Review
  7. Article
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Jean L MbisaVirus Reference Department, UK Health Security Agency, London, United Kingdom.ORCID 0000-0002-0348-9679
Zena LappTheoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, New Mexico, USA.
David F BibbyVirus Reference Department, UK Health Security Agency, London, United Kingdom.
Laura T PhillipsVirus Reference Department, UK Health Security Agency, London, United Kingdom.
Carmen F MansoVirus Reference Department, UK Health Security Agency, London, United Kingdom.
Simon PackerVirus Reference Department, UK Health Security Agency, London, United Kingdom.
Ruth SimmonsVirus Reference Department, UK Health Security Agency, London, United Kingdom.
Kathryn HarrisRoyal London Hospital, Barts Health NHS Trust, London, United Kingdom.
Jaiganesh MohanWarrington and Halton Teaching Hospitals NHS Foundation Trust, Warrington, United Kingdom.
Lalitha ChinnappanWarrington and Halton Teaching Hospitals NHS Foundation Trust, Warrington, United Kingdom.
Thomas LeitnerTheoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, New Mexico, USA.
Daniel BradshawVirus Reference Department, UK Health Security Agency, London, United Kingdom.

Funding

Reconstructing HIV Epidemics from HIV PhylogeneticsR01AI087520 · NIAID · TRIAD NATIONAL SECURITY, LLC · PI Thomas K. Leitner · 2010 to 2026
$11.2M
Leveraging public health genotyping databases for near real-time HIV surveillanceR01AI135946 · NIAID · TRIAD NATIONAL SECURITY, LLC · PI LEITNER, THOMAS K. · 2019 to 2023
$4.2M
Health Protection Research UnitLos Alamos National Laboratory 20230873PRD4National Institute for Health and CareNIAID NIH HHS R01 AI087520NIAID NIH HHS R01 AI135946NIH HHS R01AI087520Research
6 · The paper itself

Abstract

backgroundHepatitis C virus (HCV) has high genetic diversity and is classified into 8 genotypes and >90 subtypes, with some endemic to specific world regions. This could compromise direct-acting antiviral efficacy and global HCV elimination.

methodsWe characterized HCV subtypes "rare" in the United Kingdom (non-1a/1b/2b/3a/4d) by means of whole-genome sequencing via a national surveillance program. Genetic analyses to determine the genotype of samples with unresolved genotypes were undertaken by comparison with International Committee on Taxonomy of Viruses HCV reference sequences.

resultsTwo HCV variants were characterized as being closely related to the recently identified genotype (GT) 8, with >85% pairwise genetic distance similarity to GT8 sequences and within the typical intersubtype genetic distance range. The individuals infected by the variants were UK residents originally from Pakistan and India. In contrast, a third variant was only confidently identified to be more similar to GT6 compared with other genotypes across 6% of the genome and was isolated from a UK resident originally from Guyana. All 3 were cured with pangenotypic direct-acting antivirals (sofosbuvir-velpatasvir or glecaprevir-pibrentasvir) despite the presence of resistance polymorphisms in NS3 (80K/168E), NS5A (28V/30S/62L/92S/93S) and NS5B (159F).

conclusionsThis study expands our knowledge of HCV diversity by identifying 2 new GT8 subtypes and potentially a new genotype.

Indexed as

Antiviral AgentsGenotypeHepacivirusAdultBenzimidazolesCarbamatesFemaleGenetic VariationGenome, ViralHepatitis CHepatitis C, ChronicHeterocyclic Compounds, 4 or More RingsHumansMaleMiddle AgedPhylogenyAntiviral AgentsBenzimidazolesCarbamatesHeterocyclic Compounds, 4 or More RingsQuinoxalinesSofosbuvirDAA therapygenetic diversitygenotype classificationHCVwhole-genome sequencing

Identifiers

PMID38717937
PMCPMC11646602

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.