Evidence map›Paper›PMID 38717932›Full record

ArticleJournal of experimental botany2024

Macromolecular tool box to elucidate CLAVATA3/EMBRYO SURROUNDING REGION-RELATED-RLK binding, signaling, and downstream effects.

Madhumitha Narasimhan, Nina Jahnke, Felix Kallert, Elmehdi Bahafid, Franziska Böhmer, Laura Hartmann, Rüdiger Simon

Abstract read
In one paragraph

Article in Journal of experimental botany, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. A novel toolbox to record CLE peptide signaling.Frontiers in plant science · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Madhumitha NarasimhanInstitute for Developmental Genetics, Heinrich Heine University, Universitätstraße 1, D-40225 Düsseldorf, North Rhine Westphalia, Germany.ORCID 0000-0002-8600-0671
Nina JahnkeInstitute of Organic Chemistry and Macromolecular Chemistry, Heinrich Heine University, Universitätstraße 1, D-40225 Düsseldorf, North Rhine Westphalia, Germany.ORCID 0009-0001-2325-9133
Felix KallertInstitute of Organic Chemistry and Macromolecular Chemistry, Heinrich Heine University, Universitätstraße 1, D-40225 Düsseldorf, North Rhine Westphalia, Germany.
Elmehdi BahafidInstitute for Developmental Genetics, Heinrich Heine University, Universitätstraße 1, D-40225 Düsseldorf, North Rhine Westphalia, Germany.ORCID 0000-0002-2678-6246
Franziska BöhmerInstitute of Organic Chemistry and Macromolecular Chemistry, Heinrich Heine University, Universitätstraße 1, D-40225 Düsseldorf, North Rhine Westphalia, Germany.ORCID 0009-0002-2936-2104
Laura HartmannInstitute of Organic Chemistry and Macromolecular Chemistry, Heinrich Heine University, Universitätstraße 1, D-40225 Düsseldorf, North Rhine Westphalia, Germany.ORCID 0000-0003-0115-6405
Rüdiger SimonInstitute for Developmental Genetics, Heinrich Heine University, Universitätstraße 1, D-40225 Düsseldorf, North Rhine Westphalia, Germany.ORCID 0000-0002-1317-7716

Funding

Deutsche Forschungsgemeinschaft
6 · The paper itself

Abstract

Plant peptides communicate by binding to a large family of receptor-like kinases (RLKs), and they share a conserved binding mechanism, which may account for their promiscuous interaction with several RLKs. In order to understand the in vivo binding specificity of the CLAVATA3/EMBRYO SURROUNDING REGION-RELATED peptide family in Arabidopsis, we have developed a novel set of CLAVATA3 (CLV3)-based peptide tools. After carefully evaluating the CLE peptide binding characteristics, using solid phase synthesis process, we modified the CLV3 peptide and attached a fluorophore and a photoactivable side group. We observed that the labeled CLV3 shows binding specificity within the CLAVATA1 clade of RLKs while avoiding the distantly related PEP RECEPTOR clade, thus resolving the contradictory results obtained previously by many in vitro methods. Furthermore, we observed that the RLK-bound CLV3 undergoes clathrin-mediated endocytosis and is trafficked to the vacuole via ARA7 (a Rab GTPase)-labeled endosomes. Additionally, modifying CLV3 for light-controlled activation enabled spatial and temporal control over CLE signaling. Hence, our CLV3 macromolecular toolbox can be used to study rapid cell specific down-stream effects. Given the conserved binding properties, in the future our toolbox can also be used as a template to modify other CLE peptides.

Indexed as

ArabidopsisArabidopsis ProteinsSignal TransductionPeptidesProtein BindingProtein Serine-Threonine KinasesArabidopsis ProteinsAT2G27250 protein, ArabidopsisPeptidesProtein Serine-Threonine KinasesChemical probeCLAVATA signalingCLV3 peptideendocytosisfluorophore labelingphotoactivationreceptor specificitysolid phase peptide synthesissub-cellular trafficking

Identifiers

PMID38717932
PMCPMC11389835

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.