Evidence map›Paper›PMID 38716851›Full record

ArticleThe Journal of chemical physics2024

Spectroscopic analysis of the sum-frequency response of the carbon-hydrogen stretching modes in collagen type I.

Yryx Y Luna Palacios, Salile Khandani, Evan P Garcia, Anabel Chen, Siyang Wang, Khokan Roy, David Knez, Do A Kim, Israel Rocha-Mendoza, Eric O Potma

Abstract read
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Article in The Journal of chemical physics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Yryx Y Luna PalaciosDepartment of Chemistry, University of California at Irvine, Irvine, California 92697-2025, USA.ORCID 0000-0002-3754-8534
Salile KhandaniDepartment of Biomedical Engineering, University of California at Irvine, Irvine, California 92697-2025, USA.
Evan P GarciaDepartment of Chemistry, University of California at Irvine, Irvine, California 92697-2025, USA.
Anabel ChenDepartment of Chemistry, University of California at Irvine, Irvine, California 92697-2025, USA.ORCID 0000-0002-3171-6963
Siyang WangDepartment of Chemistry, University of California at Irvine, Irvine, California 92697-2025, USA.ORCID 0009-0001-3567-9581
Khokan RoyDepartment of Chemistry, University of California at Irvine, Irvine, California 92697-2025, USA.
David KnezDepartment of Chemistry, University of California at Irvine, Irvine, California 92697-2025, USA.ORCID 0000-0002-3307-882X
Do A KimDepartment of Biomedical Engineering, University of California at Irvine, Irvine, California 92697-2025, USA.
Israel Rocha-MendozaCentro de Investigación Científica y de Educación Superior de Ensenada (CICESE), Carretera Ensenada-Tijuana, No. 3918, Zona Playitas, Ensenada 22860, Mexico.ORCID 0000-0002-2693-6304
Eric O PotmaDepartment of Chemistry, University of California at Irvine, Irvine, California 92697-2025, USA.ORCID 0000-0003-3916-6131

Funding

High-resolution spectroscopic imaging with infrared nonlinear optical (IR-NLO) microscopyR01GM132506 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI POTMA, ERIC OLAF · 2019 to 2022
$742k
NIGMS NIH HHS R01 GM132506
6 · The paper itself

Abstract

We studied the origin of the vibrational signatures in the sum-frequency generation (SFG) spectrum of fibrillar collagen type I in the carbon-hydrogen stretching regime. For this purpose, we developed an all-reflective, laser-scanning SFG microscope with minimum chromatic aberrations and excellent retention of the polarization state of the incident beams. We performed detailed SFG measurements of aligned collagen fibers obtained from rat tail tendon, enabling the characterization of the magnitude and polarization-orientation dependence of individual tensor elements Xijk2 of collagen's nonlinear susceptibility. Using the three-dimensional atomic positions derived from published crystallographic data of collagen type I, we simulated its Xijk2 elements for the methylene stretching vibration and compared the predicted response with the experimental results. Our analysis revealed that the carbon-hydrogen stretching range of the SFG spectrum is dominated by symmetric stretching modes of methylene bridge groups on the pyrrolidine rings of the proline and hydroxyproline residues, giving rise to a dominant peak near 2942 cm-1 and a shoulder at 2917 cm-1. Weak asymmetric stretches of the methylene bridge group of glycine are observed in the region near 2870 cm-1, whereas asymmetric CH2-stretching modes on the pyrrolidine rings are found in the 2980 to 3030 cm-1 range. These findings help predict the protein's nonlinear optical properties from its crystal structure, thus establishing a connection between the protein structure and SFG spectroscopic measurements.

Indexed as

CarbonCollagen Type IHydrogenAnimalsRatsSpectrum AnalysisCarbonCollagen Type IHydrogen

Identifiers

PMID38716851
PMCPMC11081710

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.