Evidence map›Paper›PMID 38715385›Full record

ArticleCPT: pharmacometrics & systems pharmacology2024

Navigating the landscape of parameter identifiability methods: A workflow recommendation for model development.

Martijn van Noort, Martijn Ruppert, Joost DeJongh, Eleonora Marostica, Rolien Bosch, Emir Mešić, Nelleke Snelder

Abstract read
In one paragraph

Article in CPT: pharmacometrics & systems pharmacology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Martijn van NoortLAP&P Consultants BV, Leiden, The Netherlands.ORCID 0009-0004-7016-2846
Martijn RuppertLAP&P Consultants BV, Leiden, The Netherlands.ORCID 0009-0003-3403-5164
Joost DeJonghLAP&P Consultants BV, Leiden, The Netherlands.ORCID 0000-0003-3034-4712
Eleonora MarosticaLAP&P Consultants BV, Leiden, The Netherlands.
Rolien BoschLAP&P Consultants BV, Leiden, The Netherlands.ORCID 0000-0002-6675-8303
Emir MešićLAP&P Consultants BV, Leiden, The Netherlands.
Nelleke SnelderLAP&P Consultants BV, Leiden, The Netherlands.ORCID 0000-0003-1302-678X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In pharmacometric modeling, it is often important to know whether the data is sufficiently rich to identify the parameters of a proposed model. While it may be possible to assess this based on the results of a model fit, it is often difficult to disentangle identifiability issues from other model fitting and numerical problems. Furthermore, it can be of value to ascertain identifiability beforehand. This paper compares four methods for parameter identifiability, namely Differential Algebra for Identifiability of SYstems (DAISY), the sensitivity matrix method (SMM), Aliasing, and the Fisher information matrix method (FIMM). We discuss the characteristics of the methods and apply them to a set of applications, consisting of frequently used PK model structures, with suitable dosing regimens and sampling times. These applications were selected to validate the methods and demonstrate their usefulness. While traditional identifiability analysis provides a categorical result [PLoS One, 6, 2011, e27755; CPT Pharmacometrics Syst Pharmacol, 8, 2019, 259; Bioinformatics, 30, 2014, 1440], we argue that in practice a continuous scale better reflects the limitations on the data and is more informative. The methods were generally consistent in their evaluation of the applications. The Fisher information matrix method seemed to provide the most consistent answers. All methods provided information on the parameters that were unidentifiable. Some of the results were unexpected, indicating identifiability issues where none were foreseen, but could be explained upon further analysis. This illustrated the usefulness of identifiability assessment.

Indexed as

Models, BiologicalWorkflowComputer SimulationHumansPharmacokinetics

Identifiers

PMID38715385
PMCPMC11247124

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.