Evidence map›Paper›PMID 38714751›Full record

ArticleNPJ digital medicine2024

Multimodal data fusion using sparse canonical correlation analysis and cooperative learning: a COVID-19 cohort study.

Ahmet Gorkem Er, Daisy Yi Ding, Berrin Er, Mertcan Uzun, Mehmet Cakmak, Christoph Sadee, Gamze Durhan, Mustafa Nasuh Ozmen, Mine Durusu Tanriover, Arzu Topeli and 4 more

Abstract read
In one paragraph

Article in NPJ digital medicine, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors.

Ahmet Gorkem ErStanford Center for Biomedical Informatics Research (BMIR), Department of Medicine, Stanford University, Stanford, CA, 94305, USA. ahmetgorkemer@gmail.com.ORCID http://orcid.org/0000-0001-6638-7955
Daisy Yi DingDepartment of Biomedical Data Science, Stanford University, Stanford, CA, 94305, USA.
Berrin ErDepartment of Internal Medicine, Division of Intensive Care Medicine, Hacettepe University Faculty of Medicine, 06230, Ankara, Turkey.ORCID http://orcid.org/0000-0002-2256-3619
Mertcan UzunDepartment of Infectious Diseases and Clinical Microbiology, Hacettepe University Faculty of Medicine, 06230, Ankara, Turkey.
Mehmet CakmakDepartment of Internal Medicine, Hacettepe University Faculty of Medicine, 06230, Ankara, Turkey.
Christoph SadeeStanford Center for Biomedical Informatics Research (BMIR), Department of Medicine, Stanford University, Stanford, CA, 94305, USA.ORCID http://orcid.org/0000-0001-7416-1470
Gamze DurhanDepartment of Radiology, Hacettepe University Faculty of Medicine, 06230, Ankara, Turkey.
Mustafa Nasuh OzmenDepartment of Radiology, Hacettepe University Faculty of Medicine, 06230, Ankara, Turkey.ORCID http://orcid.org/0000-0002-9910-4808
Mine Durusu TanrioverDepartment of Internal Medicine, Hacettepe University Faculty of Medicine, 06230, Ankara, Turkey.
Arzu TopeliDepartment of Internal Medicine, Division of Intensive Care Medicine, Hacettepe University Faculty of Medicine, 06230, Ankara, Turkey.
Yesim Aydin SonDepartment of Health Informatics, Graduate School of Informatics, Middle East Technical University, 06800, Ankara, Turkey.ORCID http://orcid.org/0000-0002-8118-4272
Robert TibshiraniDepartment of Biomedical Data Science, Stanford University, Stanford, CA, 94305, USA.
Serhat UnalDepartment of Infectious Diseases and Clinical Microbiology, Hacettepe University Faculty of Medicine, 06230, Ankara, Turkey.
Olivier GevaertStanford Center for Biomedical Informatics Research (BMIR), Department of Medicine, Stanford University, Stanford, CA, 94305, USA. ogevaert@stanford.edu.ORCID http://orcid.org/0000-0002-9965-5466

Funding

Multi-scale modeling of glioma for the prediction of treatment response, treatment monitoring and treatment allocationR01CA260271 · NCI · STANFORD UNIVERSITY · PI GEVAERT, OLIVIER · 2021 to 2025
$3.1M
NCI NIH HHS R01 CA260271
6 · The paper itself

Abstract

Through technological innovations, patient cohorts can be examined from multiple views with high-dimensional, multiscale biomedical data to classify clinical phenotypes and predict outcomes. Here, we aim to present our approach for analyzing multimodal data using unsupervised and supervised sparse linear methods in a COVID-19 patient cohort. This prospective cohort study of 149 adult patients was conducted in a tertiary care academic center. First, we used sparse canonical correlation analysis (CCA) to identify and quantify relationships across different data modalities, including viral genome sequencing, imaging, clinical data, and laboratory results. Then, we used cooperative learning to predict the clinical outcome of COVID-19 patients: Intensive care unit admission. We show that serum biomarkers representing severe disease and acute phase response correlate with original and wavelet radiomics features in the LLL frequency channel (cor(Xu

Identifiers

PMID38714751
PMCPMC11076490

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.