Evidence map›Paper›PMID 38714682›Full record

ArticleNature communications2024

Replication competent HIV-guided CRISPR screen identifies antiviral factors including targets of the accessory protein Nef.

Caterina Prelli Bozzo, Alexandre Laliberté, Aurora De Luna, Chiara Pastorio, Kerstin Regensburger, Stefan Krebs, Alexander Graf, Helmut Blum, Meta Volcic, Konstantin M J Sparrer and 1 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Caterina Prelli Bozzo *Institute of Molecular Virology, Ulm University Medical Center, 89081, Ulm, Germany.ORCID http://orcid.org/0009-0000-2763-102X
Alexandre Laliberté *Institute of Molecular Virology, Ulm University Medical Center, 89081, Ulm, Germany.ORCID http://orcid.org/0000-0002-6526-4133
Aurora De LunaInstitute of Molecular Virology, Ulm University Medical Center, 89081, Ulm, Germany.ORCID http://orcid.org/0009-0008-0214-4872
Chiara PastorioInstitute of Molecular Virology, Ulm University Medical Center, 89081, Ulm, Germany.ORCID http://orcid.org/0000-0002-4745-3678
Kerstin RegensburgerInstitute of Molecular Virology, Ulm University Medical Center, 89081, Ulm, Germany.
Stefan KrebsLaboratory for Functional Genome Analysis Gene Center, LMU Munich, 81377, Munich, Germany.ORCID http://orcid.org/0000-0001-5112-9507
Alexander GrafLaboratory for Functional Genome Analysis Gene Center, LMU Munich, 81377, Munich, Germany.ORCID http://orcid.org/0000-0003-4435-6861
Helmut BlumLaboratory for Functional Genome Analysis Gene Center, LMU Munich, 81377, Munich, Germany.ORCID http://orcid.org/0000-0002-3994-2332
Meta VolcicInstitute of Molecular Virology, Ulm University Medical Center, 89081, Ulm, Germany.ORCID http://orcid.org/0000-0001-6406-7683
Konstantin M J SparrerInstitute of Molecular Virology, Ulm University Medical Center, 89081, Ulm, Germany. Konstantin.Sparrer@uni-ulm.de.ORCID http://orcid.org/0000-0002-8682-1779
Frank KirchhoffInstitute of Molecular Virology, Ulm University Medical Center, 89081, Ulm, Germany. Frank.Kirchhoff@uni-ulm.de.ORCID http://orcid.org/0000-0002-7052-2360

Funding

Deutsche Forschungsgemeinschaft (German Research Foundation) CRC 1279, SPP1923Deutsche Forschungsgemeinschaft (German Research Foundation) CRC 1279, SPP 1923, SP 1600/6-1
6 · The paper itself

Abstract

Innate antiviral factors are essential for effective defense against viral pathogens. However, the identity of major restriction mechanisms remains elusive. Current approaches to discover antiviral factors usually focus on the initial steps of viral replication and are limited to a single round of infection. Here, we engineered libraries of >1500 replication-competent HIV-1 constructs each expressing a single gRNAs to target >500 cellular genes for virus-driven discovery of antiviral factors. Passaging in CD4

Indexed as

CD4-Positive T-LymphocytesHIV-1nef Gene Products, Human Immunodeficiency VirusVirus ReplicationClustered Regularly Interspaced Short Palindromic RepeatsCRISPR-Cas SystemsHEK293 CellsHIV InfectionsHumansPhosphoproteinsrhoA GTP-Binding ProteinRNA, Guide, CRISPR-Cas SystemsVirus Internalizationnef Gene Products, Human Immunodeficiency Virusnef protein, Human immunodeficiency virus 1PhosphoproteinsrhoA GTP-Binding ProteinRNA, Guide, CRISPR-Cas Systems

Identifiers

PMID38714682
PMCPMC11076291

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.