Evidence map›Paper›PMID 38714658›Full record

ArticleNature communications2024

Spatially revealed roles for lncRNAs in Drosophila spermatogenesis, Y chromosome function and evolution.

Zhantao Shao, Jack Hu, Allison Jandura, Ronit Wilk, Matthew Jachimowicz, Lingfeng Ma, Chun Hu, Abby Sundquist, Indrani Das, Phillip Samuel-Larbi and 2 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. The Long Non-coding RNA Landscape of Endurance Exercise Training.bioRxiv : the preprint server for biology · 2025
    Article
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Zhantao ShaoDonnelly Ctr., 160 College St., University of Toronto, Toronto, ON, Canada.
Jack HuDonnelly Ctr., 160 College St., University of Toronto, Toronto, ON, Canada.
Allison JanduraDonnelly Ctr., 160 College St., University of Toronto, Toronto, ON, Canada.
Ronit WilkDonnelly Ctr., 160 College St., University of Toronto, Toronto, ON, Canada.
Matthew JachimowiczDonnelly Ctr., 160 College St., University of Toronto, Toronto, ON, Canada.
Lingfeng MaDonnelly Ctr., 160 College St., University of Toronto, Toronto, ON, Canada.
Chun HuDonnelly Ctr., 160 College St., University of Toronto, Toronto, ON, Canada.
Abby SundquistDonnelly Ctr., 160 College St., University of Toronto, Toronto, ON, Canada.
Indrani DasDonnelly Ctr., 160 College St., University of Toronto, Toronto, ON, Canada.ORCID http://orcid.org/0000-0002-4680-8473
Phillip Samuel-LarbiDonnelly Ctr., 160 College St., University of Toronto, Toronto, ON, Canada.ORCID http://orcid.org/0000-0002-2017-955X
Julie A BrillDepartment of Molecular Genetics, University of Toronto, Toronto, ON, Canada. julie.brill@sickkids.ca.ORCID http://orcid.org/0000-0002-5925-9901
Henry M KrauseDonnelly Ctr., 160 College St., University of Toronto, Toronto, ON, Canada. h.krause@utoronto.ca.ORCID http://orcid.org/0000-0002-6182-7074

Funding

Gouvernement du Canada | Canadian Institutes of Health Research (Instituts de Recherche en Santé du Canada) PJT-165884Gouvernement du Canada | Canadian Institutes of Health Research (Instituts de Recherche en Santé du Canada) PJT-165885Gouvernement du Canada | Natural Sciences and Engineering Research Council of Canada (Conseil de Recherches en Sciences Naturelles et en Génie du Canada) RGPIN-2016-06775Gouvernement du Canada | Natural Sciences and Engineering Research Council of Canada (Conseil de Recherches en Sciences Naturelles et en Génie du Canada) RGPIN-2022-05163
6 · The paper itself

Abstract

Unlike coding genes, the number of lncRNA genes in organism genomes is relatively proportional to organism complexity. From plants to humans, the tissues with highest numbers and levels of lncRNA gene expression are the male reproductive organs. To learn why, we initiated a genome-wide analysis of Drosophila lncRNA spatial expression patterns in these tissues. The numbers of genes and levels of expression observed greatly exceed those previously reported, due largely to a preponderance of non-polyadenylated transcripts. In stark contrast to coding genes, the highest numbers of lncRNAs expressed are in post-meiotic spermatids. Correlations between expression levels, localization and previously performed genetic analyses indicate high levels of function and requirement. More focused analyses indicate that lncRNAs play major roles in evolution by controlling transposable element activities, Y chromosome gene expression and sperm construction. A new type of lncRNA-based particle found in seminal fluid may also contribute to reproductive outcomes.

Indexed as

RNA, Long NoncodingSpermatogenesisY ChromosomeAnimalsDNA Transposable ElementsDrosophilaDrosophila melanogasterEvolution, MolecularMaleSpermatidsDNA Transposable ElementsRNA, Long Noncoding

Identifiers

PMID38714658
PMCPMC11076287

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.