Evidence map›Paper›PMID 38713861›Full record

ArticleDatabase : the journal of biological databases and curation2024

DIRMC: a database of immunotherapy-related molecular characteristics.

Yue Liu, Yuhuan Zhou, Xiumei Hu, Wuri Le-Ge, Haoyan Wang, Tao Jiang, Junyi Li, Yang Hu, Yadong Wang

Abstract read
In one paragraph

Article in Database : the journal of biological databases and curation, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Yue LiuFaculty of Computing, Harbin Institute of Technology, Harbin, Heilongjiang 150001, China.ORCID 0009-0005-9434-9776
Yuhuan ZhouSchool of Computer Science and Technology, Harbin Institute of Technology (Shenzhen), Shenzhen, Guangdong 518055, China.
Xiumei HuBeidahuang Industry Group General Hospital, Harbin 150001, China.
Wuri Le-GeDepartment of Pain, Tongliao City Hospital, Tongliao 028000, China.
Haoyan WangFaculty of Computing, Harbin Institute of Technology, Harbin, Heilongjiang 150001, China.
Tao JiangFaculty of Computing, Harbin Institute of Technology, Harbin, Heilongjiang 150001, China.ORCID 0000-0002-0673-8503
Junyi LiSchool of Computer Science and Technology, Harbin Institute of Technology (Shenzhen), Shenzhen, Guangdong 518055, China.ORCID 0000-0001-8045-5264
Yang HuFaculty of Computing, Harbin Institute of Technology, Harbin, Heilongjiang 150001, China.ORCID 0000-0002-4508-5365
Yadong WangFaculty of Computing, Harbin Institute of Technology, Harbin, Heilongjiang 150001, China.ORCID 0000-0001-6500-6217

Funding

Heilongjiang Province Science and Technology Plan Project 2022ZX02C20National Natural Science Foundation of China 62331012 62371161
6 · The paper itself

Abstract

Cancer immunotherapy has brought about a revolutionary breakthrough in the field of cancer treatment. Immunotherapy has changed the treatment landscape for a variety of solid and hematologic malignancies. To assist researchers in efficiently uncovering valuable information related to cancer immunotherapy, we have presented a manually curated comprehensive database called DIRMC, which focuses on molecular features involved in cancer immunotherapy. All the content was collected manually from published literature, authoritative clinical trial data submitted by clinicians, some databases for drug target prediction such as DrugBank, and some experimentally confirmed high-throughput data sets for the characterization of immune-related molecular interactions in cancer, such as a curated database of T-cell receptor sequences with known antigen specificity (VDJdb), a pathology-associated TCR database (McPAS-TCR) et al. By constructing a fully connected functional network, ranging from cancer-related gene mutations to target genes to translated target proteins to protein regions or sites that may specifically affect protein function, we aim to comprehensively characterize molecular features related to cancer immunotherapy. We have developed the scoring criteria to assess the reliability of each MHC-peptide-T-cell receptor (TCR) interaction item to provide a reference for users. The database provides a user-friendly interface to browse and retrieve data by genes, target proteins, diseases and more. DIRMC also provides a download and submission page for researchers to access data of interest for further investigation or submit new interactions related to cancer immunotherapy targets. Furthermore, DIRMC provides a graphical interface to help users predict the binding affinity between their own peptide of interest and MHC or TCR. This database will provide researchers with a one-stop resource to understand cancer immunotherapy-related targets as well as data on MHC-peptide-TCR interactions. It aims to offer reliable molecular characteristics support for both the analysis of the current status of cancer immunotherapy and the development of new immunotherapy. DIRMC is available at http://www.dirmc.tech/. Database URL: http://www.dirmc.tech/.

Indexed as

ImmunotherapyNeoplasmsDatabases, ProteinHumansReceptors, Antigen, T-CellUser-Computer InterfaceReceptors, Antigen, T-Cell

Identifiers

PMID38713861
PMCPMC11184449

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.