Evidence map›Paper›PMID 38713524›Full record

ArticleJournal of chemical theory and computation2024

Quantum Mechanical Versus Polarizable Embedding Schemes: A Study of the Xray Absorption Spectra of Aqueous Ammonia and Ammonium.

Sarai Dery Folkestad, Alexander C Paul, Regina Paul Née Matveeva, Peter Reinholdt, Sonia Coriani, Michael Odelius, Henrik Koch

Abstract read
In one paragraph

Article in Journal of chemical theory and computation, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Sarai Dery FolkestadDepartment of Chemistry, Norwegian University of Science and Technology, NTNU, 7491 Trondheim, Norway.ORCID 0000-0002-8569-4886
Alexander C PaulDepartment of Chemistry, Norwegian University of Science and Technology, NTNU, 7491 Trondheim, Norway.ORCID 0000-0002-7547-445X
Regina Paul Née MatveevaDepartment of Chemistry, Norwegian University of Science and Technology, NTNU, 7491 Trondheim, Norway.ORCID 0000-0001-6567-3570
Peter ReinholdtDepartment of Physics, Chemistry and Pharmacy, University of Southern Denmark, SDU, Campusvej 55, 5230 Odense, Denmark.ORCID 0000-0003-2406-700X
Sonia CorianiDepartment of Chemistry, Technical University of Denmark, DTU, Kemitorvet Bldg 207, 2800 Kongens Lyngby, Denmark.ORCID 0000-0002-4487-897X
Michael OdeliusDepartment of Physics, Stockholm University, 10691 Stockholm, Sweden.ORCID 0000-0002-7023-2486
Henrik KochDepartment of Chemistry, Norwegian University of Science and Technology, NTNU, 7491 Trondheim, Norway.ORCID 0000-0002-8367-8727

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The X-ray absorption spectra of aqueous ammonia and ammonium are computed using a combination of coupled cluster singles and doubles (CCSD) with different quantum mechanical and molecular mechanical embedding schemes. Specifically, we compare frozen Hartree-Fock (HF) density embedding, polarizable embedding (PE), and polarizable density embedding (PDE). Integrating CCSD with frozen HF density embedding is possible within the CC-in-HF framework, which circumvents the conventional system-size limitations of standard coupled cluster methods. We reveal similarities between PDE and frozen HF density descriptions, while PE spectra differ significantly. By including approximate triple excitations, we also investigate the effect of improving the electronic structure theory. The spectra computed using this approach show an improved intensity ratio compared to CCSD-in-HF. Charge transfer analysis of the excitations shows the local character of the pre-edge and main-edge, while the post-edge is formed by excitations delocalized over the first solvation shell and beyond.

Identifiers

PMID38713524
PMCPMC11137810

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.