Evidence map›Paper›PMID 38712250›Full record

ArticlebioRxiv : the preprint server for biology2024

Specific oncogene activation of the cell of origin in mucosal melanoma.

Swathy Babu, Jiajia Chen, Emily Robitschek, Chloé S Baron, Alicia McConnell, Constance Wu, Aikaterini Dedeilia, Moshe Sade-Feldman, Rodsy Modhurima, Michael P Manos and 12 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

22 authors.

Swathy BabuDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, 02115, USA.
Jiajia ChenDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, 02115, USA.
Emily RobitschekDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, 02115, USA.
Chloé S BaronStem Cell Program and Division of Hematology/Oncology, Boston Children's Hospital, Howard Hughes Medical Institute, Boston, MA, 02115, USA.
Alicia McConnellStem Cell Program and Division of Hematology/Oncology, Boston Children's Hospital, Howard Hughes Medical Institute, Boston, MA, 02115, USA.
Constance WuStem Cell Program and Division of Hematology/Oncology, Boston Children's Hospital, Howard Hughes Medical Institute, Boston, MA, 02115, USA.
Aikaterini DedeiliaMassachusetts General Hospital (MGH) Cancer Center, Boston, MA, 02114, USA.
Moshe Sade-FeldmanMassachusetts General Hospital (MGH) Cancer Center, Boston, MA, 02114, USA.
Rodsy ModhurimaStem Cell Program and Division of Hematology/Oncology, Boston Children's Hospital, Howard Hughes Medical Institute, Boston, MA, 02115, USA.
Michael P ManosDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, 02115, USA.
Kevin Y ChenStem Cell Program and Division of Hematology/Oncology, Boston Children's Hospital, Howard Hughes Medical Institute, Boston, MA, 02115, USA.
Anna M CoxDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, 02115, USA.
Calvin G LudwigStem Cell Program and Division of Hematology/Oncology, Boston Children's Hospital, Howard Hughes Medical Institute, Boston, MA, 02115, USA.
Jiekun YangBroad Institute of Massachusetts Institute of Technology (MIT), Cambridge, MA, 02142, USA.
Manolis KellisBroad Institute of Massachusetts Institute of Technology (MIT), Cambridge, MA, 02142, USA.
Elizabeth I BuchbinderDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, 02115, USA.
Nir HacohenMassachusetts General Hospital (MGH) Cancer Center, Boston, MA, 02114, USA.
Genevieve M BolandMassachusetts General Hospital (MGH) Cancer Center, Boston, MA, 02114, USA.
Brian J AbrahamDepartment of Computational Biology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
David LiuDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, 02115, USA.
Leonard I ZonStem Cell Program and Division of Hematology/Oncology, Boston Children's Hospital, Howard Hughes Medical Institute, Boston, MA, 02115, USA.
Megan L InscoDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, 02115, USA.

Funding

Transcriptional mechanisms and melanomaP01CA163222 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI David Liu · 2013 to 2026
$25.3M
Investigating Transcriptional Elongation and Nuclear RNA Surveillance in MelanomaK08CA248727 · NCI · DANA-FARBER CANCER INST · PI INSCO, MEGAN LEIGH · 2021 to 2025
$980k
NCI NIH HHS K08 CA248727NCI NIH HHS P01 CA163222
6 · The paper itself

Abstract

Mucosal melanoma (MM) is a deadly cancer derived from mucosal melanocytes. To test the consequences of MM genetics, we developed a zebrafish model in which all melanocytes experienced CCND1 expression and loss of PTEN and TP53. Surprisingly, melanoma only developed from melanocytes lining internal organs, analogous to the location of patient MM. We found that zebrafish MMs had a unique chromatin landscape from cutaneous melanoma. Internal melanocytes could be labeled using a MM-specific transcriptional enhancer. Normal zebrafish internal melanocytes shared a gene expression signature with MMs. Patient and zebrafish MMs have increased migratory neural crest gene and decreased antigen presentation gene expression, consistent with the increased metastatic behavior and decreased immunotherapy sensitivity of MM. Our work suggests the cell state of the originating melanocyte influences the behavior of derived melanomas. Our animal model phenotypically and transcriptionally mimics patient tumors, allowing this model to be used for MM therapeutic discovery.

Identifiers

PMID38712250
PMCPMC11071392

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.