Evidence map›Paper›PMID 38711584›Full record

ArticleBeilstein journal of organic chemistry2024

Monitoring carbohydrate 3D structure quality with the

Jordan S Dialpuri, Haroldas Bagdonas, Lucy C Schofield, Phuong Thao Pham, Lou Holland, Jon Agirre

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Beilstein journal of organic chemistry, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Chemical glycobiology.Beilstein journal of organic chemistry · 2025
    Article
  4. Review
  5. Post-translational modifications in the Protein Data Bank.Acta crystallographica. Section D, Structural biology · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Jordan S DialpuriYork Structural Biology Laboratory, Department of Chemistry, University of York, UK.ORCID https://orcid.org/0000-0002-6205-2661
Haroldas BagdonasYork Structural Biology Laboratory, Department of Chemistry, University of York, UK.ORCID https://orcid.org/0000-0001-5028-4847
Lucy C SchofieldYork Structural Biology Laboratory, Department of Chemistry, University of York, UK.ORCID https://orcid.org/0009-0001-2069-878X
Phuong Thao PhamYork Structural Biology Laboratory, Department of Chemistry, University of York, UK.ORCID https://orcid.org/0000-0002-6205-1298
Lou HollandYork Structural Biology Laboratory, Department of Chemistry, University of York, UK.ORCID https://orcid.org/0000-0002-3867-1833
Jon AgirreYork Structural Biology Laboratory, Department of Chemistry, University of York, UK.ORCID https://orcid.org/0000-0002-1086-0253

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The remediation of the carbohydrate data of the Protein Data Bank (PDB) has brought numerous enhancements to the findability and interpretability of deposited glycan structures, yet crucial quality indicators are either missing or hard to find on the PDB pages. Without a way to access wider glycochemical context, problematic structures may be taken as fact by keen but inexperienced scientists. The

Indexed as

carbohydratesdatabaseN-glycansN-glycosylationpolysaccharidesvalidationwebsite

Identifiers

PMID38711584
PMCPMC11070961

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.