Evidence map›Paper›PMID 38710674›Full record

ArticleNature communications2024

Active site remodeling in tumor-relevant IDH1 mutants drives distinct kinetic features and potential resistance mechanisms.

Matthew Mealka, Nicole A Sierra, Diego Avellaneda Matteo, Elene Albekioni, Rachel Khoury, Timothy Mai, Brittany M Conley, Nalani J Coleman, Kaitlyn A Sabo, Elizabeth A Komives and 6 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors.

Matthew MealkaDepartment of Chemistry & Biochemistry, San Diego State University, San Diego, CA, USA.
Nicole A SierraDepartment of Chemistry & Biochemistry, San Diego State University, San Diego, CA, USA.
Diego Avellaneda MatteoDepartment of Chemistry & Biochemistry, San Diego State University, San Diego, CA, USA.
Elene AlbekioniDepartment of Chemistry & Biochemistry, San Diego State University, San Diego, CA, USA.
Rachel KhouryDepartment of Chemistry & Biochemistry, San Diego State University, San Diego, CA, USA.
Timothy MaiDepartment of Chemistry & Biochemistry, San Diego State University, San Diego, CA, USA.
Brittany M ConleyDepartment of Chemistry & Biochemistry, San Diego State University, San Diego, CA, USA.
Nalani J ColemanDepartment of Chemistry & Biochemistry, San Diego State University, San Diego, CA, USA.
Kaitlyn A SaboDepartment of Chemistry & Biochemistry, San Diego State University, San Diego, CA, USA.
Elizabeth A KomivesDepartment of Chemistry & Biochemistry, University of California San Diego, La Jolla, CA, USA.ORCID http://orcid.org/0000-0001-5264-3866
Andrey A BobkovSanford Burnham Prebys Medical Discovery Institute, La Jolla, CA, USA.
Andrew L CooksyDepartment of Chemistry & Biochemistry, San Diego State University, San Diego, CA, USA.
Steve SillettiDepartment of Chemistry & Biochemistry, University of California San Diego, La Jolla, CA, USA.
Jamie M SchifferVividion Therapeutics, San Diego, CA, USA.
Tom HuxfordDepartment of Chemistry & Biochemistry, San Diego State University, San Diego, CA, USA.ORCID http://orcid.org/0000-0002-1939-7373
Christal D SohlDepartment of Chemistry & Biochemistry, San Diego State University, San Diego, CA, USA. csohl@sdsu.edu.ORCID http://orcid.org/0000-0002-8048-0205

Funding

Tumor Microenvironment and Cancer ImmunologyP30CA030199 · NCI · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI ELENA B PASQUALE · 1985 to 2026
$107.2M
A Synchrotron Radiation Structural Biology ResourcesP30GM133894 · NIGMS · STANFORD UNIVERSITY · PI Aina E. Cohen, KEITH O HODGSON · 2020 to 2026
$43.3M
User Training and OutreachP30GM124165 · NIGMS · CORNELL UNIVERSITY · PI STEVEN E EALICK · 2018 to 2026
$34.2M
THE INTERSECTION OF LANGUAGE AND AFFECTR25GM058906 · NIGMS · SAN DIEGO STATE UNIVERSITY · PI TONG, WILLIAM G. · 1999 to 2021
$10.7M
Promoting wellness and resiliencyT34GM008303 · NIGMS · SAN DIEGO STATE UNIVERSITY · PI ATKINS, CATHERINE J · 1989 to 2022
$6.4M
Isocitrate dehydrogenase (IDH) mutations as drivers of organelle stress and dysfunction"R35GM137773 · NIGMS · SAN DIEGO STATE UNIVERSITY · PI Christal Dyane Sohl · 2020 to 2026
$2.7M
Pixel Array Detector for Macromolecular CrystallographyS10OD021527 · OD · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2016 to 2016
$2.0M
MARC at San Diego State UniversityT34GM149430 · NIGMS · SAN DIEGO STATE UNIVERSITY · PI Christal Dyane Sohl · 2023 to 2026
$1.6M
Synapt G2-S System with HXMS AutomationS10OD016234 · OD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI KOMIVES, ELIZABETH A. · 2013 to 2013
$600k
NCI NIH HHS P30 CA030199NIGMS NIH HHS P30 GM124165NIGMS NIH HHS P30 GM133894NIGMS NIH HHS R25 GM058906NIGMS NIH HHS R35 GM137773NIGMS NIH HHS T34 GM008303NIGMS NIH HHS T34 GM149430NIH HHS S10 OD016234NIH HHS S10 OD021527
6 · The paper itself

Abstract

Mutations in human isocitrate dehydrogenase 1 (IDH1) drive tumor formation in a variety of cancers by replacing its conventional activity with a neomorphic activity that generates an oncometabolite. Little is understood of the mechanistic differences among tumor-driving IDH1 mutants. We previously reported that the R132Q mutant unusually preserves conventional activity while catalyzing robust oncometabolite production, allowing an opportunity to compare these reaction mechanisms within a single active site. Here, we employ static and dynamic structural methods and observe that, compared to R132H, the R132Q active site adopts a conformation primed for catalysis with optimized substrate binding and hydride transfer to drive improved conventional and neomorphic activity over R132H. This active site remodeling reveals a possible mechanism of resistance to selective mutant IDH1 therapeutic inhibitors. This work enhances our understanding of fundamental IDH1 mechanisms while pinpointing regions for improving inhibitor selectivity.

Indexed as

Catalytic DomainIsocitrate DehydrogenaseMutationDrug Resistance, NeoplasmEnzyme InhibitorsHumansKineticsNeoplasmsEnzyme InhibitorsIDH1 protein, humanIsocitrate Dehydrogenase

Identifiers

PMID38710674
PMCPMC11074275

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.