Evidence map›Paper›PMID 38709852›Full record

ArticlePLoS computational biology2024

Challenges of COVID-19 Case Forecasting in the US, 2020-2021.

Velma K Lopez, Estee Y Cramer, Robert Pagano, John M Drake, Eamon B O'Dea, Madeline Adee, Turgay Ayer, Jagpreet Chhatwal, Ozden O Dalgic, Mary A Ladd and 99 more

Abstract read
In one paragraph

Article in PLoS computational biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Review
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  8. Improving outbreak forecasts through model augmentation.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. COVID-19 trends across borders: Identifying correlations among countries.The Journal of international medical research · 2024
    Article
  15. Article
  16. Review
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

109 authors.

Velma K LopezCOVID-19 Response, Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America.ORCID 0000-0003-2926-4010
Estee Y CramerUniversity of Massachusetts, Amherst, Amherst, Massachusetts, United States of America.ORCID 0000-0003-1373-3177
Robert PaganoUnaffiliated, Tucson, Arizona, United States of America.
John M DrakeUniversity of Georgia, Athens, Georgia, United States of America.
Eamon B O'DeaUniversity of Georgia, Athens, Georgia, United States of America.
Madeline AdeeMassachusetts General Hospital, Boston, Massachusetts, United States of America.
Turgay AyerGeorgia Institute of Technology, Atlanta, Georgia, United States of America.
Jagpreet ChhatwalMassachusetts General Hospital, Harvard Medical School, Boston, Massachusetts, United States of America.
Ozden O DalgicValue Analytics Labs, Boston, Massachusetts, United States of America.
Mary A LaddMassachusetts General Hospital, Boston, Massachusetts, United States of America.
Benjamin P LinasBoston University School of Medicine, Boston, Massachusetts, United States of America.
Peter P MuellerMassachusetts General Hospital, Harvard Medical School, Boston, Massachusetts, United States of America.
Jade XiaoGeorgia Institute of Technology, Atlanta, Georgia, United States of America.
Johannes BracherChair of Econometrics and Statistics, Karlsruhe Institute of Technology, Karlsruhe, Germany.
Alvaro J Castro RivadeneiraUniversity of Massachusetts, Amherst, Amherst, Massachusetts, United States of America.
Aaron GerdingUniversity of Massachusetts, Amherst, Amherst, Massachusetts, United States of America.
Tilmann GneitingHeidelberg Institute for Theoretical Studies, Heidelberg, Germany.ORCID 0000-0001-9397-3271
Yuxin HuangUniversity of Massachusetts, Amherst, Amherst, Massachusetts, United States of America.
Dasuni JayawardenaUniversity of Massachusetts, Amherst, Amherst, Massachusetts, United States of America.
Abdul H KanjiUniversity of Massachusetts, Amherst, Amherst, Massachusetts, United States of America.
Khoa LeUniversity of Massachusetts, Amherst, Amherst, Massachusetts, United States of America.
Anja MühlemannInstitute of Mathematical Statistics and Actuarial Science, University of Bern, Bern, Switzerland.
Jarad NiemiIowa State University, Ames, Iowa, United States of America.ORCID 0000-0002-5079-158X
Evan L RayUniversity of Massachusetts, Amherst, Amherst, Massachusetts, United States of America.
Ariane StarkUniversity of Massachusetts, Amherst, Amherst, Massachusetts, United States of America.
Yijin WangUniversity of Massachusetts, Amherst, Amherst, Massachusetts, United States of America.ORCID 0000-0003-4438-6366
Nutcha WattanachitUniversity of Massachusetts, Amherst, Amherst, Massachusetts, United States of America.
Martha W ZornUniversity of Massachusetts, Amherst, Amherst, Massachusetts, United States of America.
Sen PeiMailman School of Public Health, Columbia University, New York, New York, United States of America.
Jeffrey ShamanMailman School of Public Health, Columbia University, New York, New York, United States of America.
Teresa K YamanaMailman School of Public Health, Columbia University, New York, New York, United States of America.ORCID 0000-0001-8349-3151
Samuel R TarasewiczFederal Reserve Bank of San Francisco, San Francisco, California, United States of America.
Daniel J WilsonFederal Reserve Bank of San Francisco, San Francisco, California, United States of America.
Sid BaccamIEM, Bel Air, Maryland, United States of America.
Heidi GurungIEM, Bel Air, Maryland, United States of America.
Steve StageIEM, Baton Rouge, Louisiana, United States of America.
Brad SuchoskiIEM, Bel Air, Maryland, United States of America.
Lei GaoGeorge Mason University, Fairfax, Virginia, United States of America.ORCID 0000-0002-4707-0933
Zhiling GuIowa State University, Ames, Iowa, United States of America.
Myungjin KimKyungpook National University, Bukgu, Daegu, Republic of Korea.
Xinyi LiClemson University, Clemson, South Carolina, United States of America.ORCID 0000-0003-0080-7034
Guannan WangCollege of William & Mary, Williamsburg, Virginia, United States of America.
Lily WangGeorge Mason University, Fairfax, Virginia, United States of America.
Yueying WangAmazon, Seattle, Washington, United States of America.
Shan YuUniversity of Virginia, Charlottesville, Virginia, United States of America.
Lauren GardnerJohns Hopkins University, Baltimore, Maryland, United States of America.
Sonia JindalJohns Hopkins University, Baltimore, Maryland, United States of America.
Maximilian MarshallJohns Hopkins University, Baltimore, Maryland, United States of America.
Kristen NixonJohns Hopkins University, Baltimore, Maryland, United States of America.
Juan DentJohns Hopkins Bloomberg School of Public Health, Baltimore, Maryland, United States of America.ORCID 0000-0003-3154-0731
Alison L HillJohns Hopkins University, Baltimore, Maryland, United States of America.
Joshua KaminskyJohns Hopkins Bloomberg School of Public Health, Baltimore, Maryland, United States of America.
Elizabeth C LeeJohns Hopkins Bloomberg School of Public Health, Baltimore, Maryland, United States of America.ORCID 0000-0002-4156-9637
Joseph C LemaitreÉcole Polytechnique Fédérale de Lausanne, Lausanne, Switzerland.ORCID 0000-0002-2677-6574
Justin LesslerGillings School of Global Public Health, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States of America.
Claire P SmithJohns Hopkins Bloomberg School of Public Health, Baltimore, Maryland, United States of America.
Shaun TrueloveJohns Hopkins Bloomberg School of Public Health, Baltimore, Maryland, United States of America.
Matt KinseyJohns Hopkins University Applied Physics Lab, Baltimore, Maryland, United States of America.
Luke C MullanyJohns Hopkins University Applied Physics Lab, Baltimore, Maryland, United States of America.
Kaitlin Rainwater-LovettJohns Hopkins University Applied Physics Lab, Baltimore, Maryland, United States of America.ORCID 0000-0002-8707-7339
Lauren ShinJohns Hopkins University Applied Physics Lab, Baltimore, Maryland, United States of America.
Katharine TallaksenJohns Hopkins University Applied Physics Lab, Baltimore, Maryland, United States of America.
Shelby WilsonJohns Hopkins University Applied Physics Lab, Baltimore, Maryland, United States of America.
Dean KarlenUniversity of Victoria and TRIUMF, Victoria, British Columbia, Canada.
Lauren CastroLos Alamos National Laboratory, Los Alamos, New Mexico, United States of America.
Geoffrey FairchildLos Alamos National Laboratory, Los Alamos, New Mexico, United States of America.
Isaac MichaudLos Alamos National Laboratory, Los Alamos, New Mexico, United States of America.
Dave OsthusLos Alamos National Laboratory, Los Alamos, New Mexico, United States of America.
Jiang BianMicrosoft, Redmond, Washington, United States of America.
Wei CaoMicrosoft, Redmond, Washington, United States of America.
Zhifeng GaoMicrosoft, Redmond, Washington, United States of America.
Juan Lavista FerresMicrosoft, Redmond, Washington, United States of America.
Chaozhuo LiMicrosoft, Redmond, Washington, United States of America.
Tie-Yan LiuMicrosoft, Redmond, Washington, United States of America.
Xing XieMicrosoft, Redmond, Washington, United States of America.
Shun ZhangMicrosoft, Redmond, Washington, United States of America.
Shun ZhengMicrosoft, Redmond, Washington, United States of America.
Matteo ChinazziLaboratory for the Modeling of Biological and Socio-technical Systems, Northeastern University, Boston, Massachusetts, United States of America.ORCID 0000-0002-5955-1929
Jessica T DavisLaboratory for the Modeling of Biological and Socio-technical Systems, Northeastern University, Boston, Massachusetts, United States of America.
Kunpeng MuLaboratory for the Modeling of Biological and Socio-technical Systems, Northeastern University, Boston, Massachusetts, United States of America.
Ana Pastore Y PionttiLaboratory for the Modeling of Biological and Socio-technical Systems, Northeastern University, Boston, Massachusetts, United States of America.
Alessandro VespignaniLaboratory for the Modeling of Biological and Socio-technical Systems, Northeastern University, Boston, Massachusetts, United States of America.
Xinyue XiongLaboratory for the Modeling of Biological and Socio-technical Systems, Northeastern University, Boston, Massachusetts, United States of America.
Robert WalravenUnaffiliated, Davis, California, United States of America.
Jinghui ChenUniversity of California, Los Angeles, Los Angeles, California, United States of America.
Quanquan GuUniversity of California, Los Angeles, Los Angeles, California, United States of America.
Lingxiao WangUniversity of California, Los Angeles, Los Angeles, California, United States of America.
Pan XuUniversity of California, Los Angeles, Los Angeles, California, United States of America.ORCID 0000-0002-2559-8622
Weitong ZhangUniversity of California, Los Angeles, Los Angeles, California, United States of America.
Difan ZouUniversity of California, Los Angeles, Los Angeles, California, United States of America.
Graham Casey GibsonLos Alamos National Laboratory, Los Alamos, New Mexico, United States of America.
Daniel SheldonUniversity of Massachusetts, Amherst, Amherst, Massachusetts, United States of America.
Ajitesh SrivastavaUniversity of Southern California, Los Angeles, California, United States of America.
Aniruddha AdigaUniversity of Virginia, Charlottesville, Virginia, United States of America.
Benjamin HurtUniversity of Virginia, Charlottesville, Virginia, United States of America.
Gursharn KaurUniversity of Virginia, Charlottesville, Virginia, United States of America.
Bryan LewisUniversity of Virginia, Charlottesville, Virginia, United States of America.
Madhav MaratheUniversity of Virginia, Charlottesville, Virginia, United States of America.
Akhil Sai PeddireddyDiscreet Labs, Raleigh, North Carolina, United States of America.
Przemyslaw PorebskiUniversity of Virginia, Charlottesville, Virginia, United States of America.
Srinivasan VenkatramananUniversity of Virginia, Charlottesville, Virginia, United States of America.
Lijing WangNew Jersey Institute of Technology, Newark, New Jersey, United States of America.
Pragati V PrasadCOVID-19 Response, Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America.
Jo W WalkerCOVID-19 Response, Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America.
Alexander E WebberCOVID-19 Response, Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America.
Rachel B SlaytonCOVID-19 Response, Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America.
Matthew BiggerstaffCOVID-19 Response, Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America.
Nicholas G ReichUniversity of Massachusetts, Amherst, Amherst, Massachusetts, United States of America.
Michael A JohanssonCOVID-19 Response, Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America.

Funding

Influenza Forecasting Center of Excellence at University of Massachusetts AmherstU01IP001122 · IP · UNIVERSITY OF MASSACHUSETTS AMHERST · PI REICH, NICHOLAS G · 2019 to 2023
$5.4M
Statistical methods for real-time forecasts of infectious disease: expanding dynamic time-series and machine learning approaches for pandemic scenariosR35GM119582 · NIGMS · UNIVERSITY OF MASSACHUSETTS AMHERST · PI Nicholas G Reich · 2016 to 2026
$4.8M
Systems Analysis of Social Pathways of Epidemics to Reduce Health DisparitiesR01GM109718 · NIGMS · VIRGINIA POLYTECHNIC INST AND ST UNIV · PI MARATHE, ACHLA, VULLIKANTI, ANIL · 2014 to 2022
$3.6M
Quantifying Error Growth to Improve Infectious Disease Forecast AccuracyR01AI163023 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI JEFFREY L SHAMAN · 2021 to 2026
$3.3M
Research in practice: translating infectious disease epidemiology RIP-TIDET32AI165369 · NIAID · JOHNS HOPKINS UNIVERSITY · PI WILLIAM J MOSS · 2022 to 2026
$1.5M
ACL HHS U01IP001122ACL HHS U01IP001137NCIRD CDC HHS U01 IP001122NCIRD CDC HHS U01 IP001137NIAID NIH HHS R01 AI163023NIAID NIH HHS T32 AI165369NIGMS NIH HHS R01 GM109718NIGMS NIH HHS R35 GM119582
6 · The paper itself

Abstract

During the COVID-19 pandemic, forecasting COVID-19 trends to support planning and response was a priority for scientists and decision makers alike. In the United States, COVID-19 forecasting was coordinated by a large group of universities, companies, and government entities led by the Centers for Disease Control and Prevention and the US COVID-19 Forecast Hub (https://covid19forecasthub.org). We evaluated approximately 9.7 million forecasts of weekly state-level COVID-19 cases for predictions 1-4 weeks into the future submitted by 24 teams from August 2020 to December 2021. We assessed coverage of central prediction intervals and weighted interval scores (WIS), adjusting for missing forecasts relative to a baseline forecast, and used a Gaussian generalized estimating equation (GEE) model to evaluate differences in skill across epidemic phases that were defined by the effective reproduction number. Overall, we found high variation in skill across individual models, with ensemble-based forecasts outperforming other approaches. Forecast skill relative to the baseline was generally higher for larger jurisdictions (e.g., states compared to counties). Over time, forecasts generally performed worst in periods of rapid changes in reported cases (either in increasing or decreasing epidemic phases) with 95% prediction interval coverage dropping below 50% during the growth phases of the winter 2020, Delta, and Omicron waves. Ideally, case forecasts could serve as a leading indicator of changes in transmission dynamics. However, while most COVID-19 case forecasts outperformed a naïve baseline model, even the most accurate case forecasts were unreliable in key phases. Further research could improve forecasts of leading indicators, like COVID-19 cases, by leveraging additional real-time data, addressing performance across phases, improving the characterization of forecast confidence, and ensuring that forecasts were coherent across spatial scales. In the meantime, it is critical for forecast users to appreciate current limitations and use a broad set of indicators to inform pandemic-related decision making.

Indexed as

COVID-19ForecastingPandemicsSARS-CoV-2Computational BiologyHumansModels, StatisticalUnited States

Identifiers

PMID38709852
PMCPMC11098513

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.