Evidence map›Paper›PMID 38709485›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2024

Reconstructing Signaling Networks Using Biosensor Barcoding.

Suyang Wang, Wei-Yu Chi, Gabriel Au, Cheng-Chieh Huang, Jr-Ming Yang, Chuan-Hsiang Huang

Abstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Suyang WangDepartment of Pathology, Johns Hopkins Medical Institutions, Baltimore, MD, USA.
Wei-Yu ChiDepartment of Pathology, Johns Hopkins Medical Institutions, Baltimore, MD, USA.
Gabriel AuDepartment of Biology, Krieger School of Arts and Sciences, Johns Hopkins University, Baltimore, MD, USA.
Cheng-Chieh HuangDepartment of Pathology, Johns Hopkins Medical Institutions, Baltimore, MD, USA.
Jr-Ming YangDepartment of Pathology, Johns Hopkins Medical Institutions, Baltimore, MD, USA. jyang38@jhmi.edu.
Chuan-Hsiang HuangDepartment of Pathology, Johns Hopkins Medical Institutions, Baltimore, MD, USA. chuang29@jhmi.edu.

Funding

Treatment of HIV- and HIV+ Patients with HPV16+ CIN2/3 Using pNGLV4a-hCRTE6E7L2 DNA vaccine administered intramuscularly via electroporationP50CA098252 · NCI · JOHNS HOPKINS UNIVERSITY · PI TZYY-CHOOU WU · 2003 to 2026
$53.5M
Deciphering the network structure of signaling dynamicsR01GM136711 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI HUANG, CHUAN-HSIANG · 2020 to 2024
$1.7M
Zeiss LSM780 Confocal Microscope for a Core FacilityS10OD016374 · OD · JOHNS HOPKINS UNIVERSITY · PI KUO, SCOT CHARLES · 2013 to 2013
$584k
NCI NIH HHS P50 CA098252NIGMS NIH HHS R01 GM136711NIH HHS S10 OD016374
6 · The paper itself

Abstract

Understanding how signaling networks are regulated offers valuable insights into how cells and organisms react to internal and external stimuli and is crucial for developing novel strategies to treat diseases. To achieve this, it is necessary to delineate the intricate interactions between the nodes in the network, which can be accomplished by measuring the activities of individual nodes under perturbation conditions. To facilitate this, we have recently developed a biosensor barcoding technique that enables massively multiplexed tracking of numerous signaling activities in live cells using genetically encoded fluorescent biosensors. In this chapter, we detail how we employed this method to reconstruct the EGFR signaling network by systematically monitoring the activities of individual nodes under perturbations.

Indexed as

Biosensing TechniquesSignal TransductionErbB ReceptorsHumansErbB ReceptorsDeep learningEpidermal growth factor receptor (EGFR)Genetically encoded fluorescent biosensorsLive cell imagingMultiplexingReceptor tyrosine kinases (RTKs)Signaling networkSmall-molecule inhibitors

Identifiers

PMID38709485
PMCPMC11177205

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.