Evidence map›Paper›PMID 38708190›Full record

ArticleJournal of molecular biology2023

Identification of RBM46 as a novel APOBEC1 cofactor for C-to-U RNA-editing activity.

Shanshan Wang, Kyumin Kim, Nicolas Gelvez, Claire Chung, Jean-Francois Gout, Benjamin Fixman, Marc Vermulst, Xiaojiang S Chen

Abstract read
In one paragraph

Article in Journal of molecular biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Two codes of RNA editing by deamination in human diseases.Experimental & molecular medicine · 2026
    Review
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Shanshan WangMolecular and Computational Biology Section, University of Southern California, Los Angeles, CA 90089, USA.
Kyumin KimMolecular and Computational Biology Section, University of Southern California, Los Angeles, CA 90089, USA.
Nicolas GelvezMolecular and Computational Biology Section, University of Southern California, Los Angeles, CA 90089, USA.
Claire ChungSchool of Gerontology, University of Southern California, Los Angeles, CA 90089, USA.
Jean-Francois GoutDepartment of Biological Sciences, Mississippi State University, Mississippi State, MS 39762, USA.
Benjamin FixmanPrograms in Biomedical and Biological Sciences (PIBBS), Keck School of Medicine, University of Southern California, Los Angeles, CA 90089, USA.
Marc VermulstSchool of Gerontology, University of Southern California, Los Angeles, CA 90089, USA.
Xiaojiang S ChenMolecular and Computational Biology Section, University of Southern California, Los Angeles, CA 90089, USA.

Funding

Structural Basis of APOBEC Functions and Interactions with HIV-VifR01AI150524 · NIAID · UNIVERSITY OF SOUTHERN CALIFORNIA · PI XIAOJIANG S CHEN · 2019 to 2026
$3.8M
NIAID NIH HHS R01 AI150524
6 · The paper itself

Abstract

Cytidine (C) to Uridine (U) RNA editing is a post-transcription modification that is involved in diverse biological processes. APOBEC1 (A1) catalyzes the conversion of C-to-U in RNA, which is important in regulating cholesterol metabolism through its editing activity on ApoB mRNA. However, A1 requires a cofactor to form an "editosome" for RNA editing activity. A1CF and RBM47, both RNA-binding proteins, have been identified as cofactors that pair with A1 to form editosomes and edit ApoB mRNA and other cellular RNAs. SYNCRIP is another RNA-binding protein that has been reported as a potential regulator of A1, although it is not directly involved in A1 RNA editing activity. Here, we describe the identification and characterization of a novel cofactor, RBM46 (RNA-Binding-Motif-protein-46), that can facilitate A1 to perform C-to-U editing on ApoB mRNA. Additionally, using the low-error circular RNA sequencing technique, we identified novel cellular RNA targets for the A1/RBM46 editosome. Our findings provide further insight into the complex regulatory network of RNA editing and the potential new function of A1 with its cofactors.

Indexed as

APOBEC-1 DeaminaseRNA-Binding ProteinsRNA EditingUridineApolipoproteins BCytidineHEK293 CellsHumansRNA, MessengerA1CF protein, humanAPOBEC-1 DeaminaseAPOBEC1 protein, humanApolipoproteins BCytidineRBM46 protein, humanRNA-Binding ProteinsRNA, MessengerUridine

Identifiers

PMID38708190
PMCPMC11068304

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.