Evidence map›Paper›PMID 38704405›Full record

ArticleScientific data2024

Chromosome-level genome assembly of Odontothrips loti Haliday (Thysanoptera: Thripidae).

Luo Yingning, Wei Shuhua, Dai Wenting, Miao Miao, Wang Ying, Zhang Rong, Ban Liping

Abstract readDataset
In one paragraph

Article in Scientific data, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Luo YingningCollege of Grassland Science and Technology, China Agricultural University, Beijing, 100193, China.ORCID 0009-0005-0787-8275
Wei ShuhuaInstitute of Plant Protection, Ningxia Academy of Agriculture and Forestry Sciences, Yinchuan, 750002, China.
Dai WentingCollege of Grassland Science and Technology, China Agricultural University, Beijing, 100193, China.
Miao MiaoCollege of Grassland Science and Technology, China Agricultural University, Beijing, 100193, China.
Wang YingInstitute of Plant Protection, Ningxia Academy of Agriculture and Forestry Sciences, Yinchuan, 750002, China.
Zhang RongInstitute of Plant Protection, Ningxia Academy of Agriculture and Forestry Sciences, Yinchuan, 750002, China.
Ban LipingCollege of Grassland Science and Technology, China Agricultural University, Beijing, 100193, China. liping_ban@163.com.ORCID 0000-0001-8560-6922

Funding

National Natural Science Foundation of China (National Science Foundation of China) 31971759
6 · The paper itself

Abstract

As the predominant pest of alfalfa, Odontothrips loti Haliday causes great damages over the major alfalfa-growing regions of China. The characteristics of strong mobility and fecundity make them develop rapidly in the field and hard to be controlled. There is a shortage of bioinformation and limited genomic resources available of O. loti for us to develop novel pest management strategies. In this study, we constructed a chromosome-level reference genome assembly of O. loti with a genome size of 346.59 Mb and scaffold N50 length of 18.52 Mb, anchored onto 16 chromosomes and contained 20128 genes, of which 93.59% were functionally annotated. The results of 99.20% complete insecta_odb10 genes in BUSCO analysis, 91.11% short reads mapped to the ref-genome, and the consistent tendency among the thrips in the distribution of gene length reflects the quality of genome. Our study provided the first report of genome for the genus Odontothrips, which offers a genomic resource for further investigations on evolution and molecular biology of O. loti, contributing to pest management.

Indexed as

Genome, InsectThysanopteraAnimalsChromosomes, Insect

Identifiers

PMID38704405
PMCPMC11069530

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.