Evidence map›Paper›PMID 38704378›Full record

ArticleNature communications2024

Arabidopsis SBT5.2 and SBT1.7 subtilases mediate C-terminal cleavage of flg22 epitope from bacterial flagellin.

Sayaka Matsui, Saki Noda, Keiko Kuwata, Mika Nomoto, Yasuomi Tada, Hidefumi Shinohara, Yoshikatsu Matsubayashi

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Mechanisms and balanced regulation of plant immunity.Nature reviews. Molecular cell biology · 2026
    Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Plant subtilases as key initiators of peptide ligand-receptor signaling.The Plant journal : for cell and molecular biology · 2026
    Review
  7. Review
  8. Review
  9. Review
  10. Article
  11. mamp-ml: A deep learning approach to epitope immunogenicity in plants.bioRxiv : the preprint server for biology · 2025
    Article
  12. Review
  13. Streamline Protocol forPlant direct · 2025
    Article
  14. Article
  15. Article
  16. Peptide hormones in plants.Molecular horticulture · 2025
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Sayaka MatsuiDivision of Biological Science, Graduate School of Science, Nagoya University, Chikusa, Nagoya, 464-8602, Japan.ORCID http://orcid.org/0009-0000-1343-1027
Saki NodaDivision of Biological Science, Graduate School of Science, Nagoya University, Chikusa, Nagoya, 464-8602, Japan.
Keiko KuwataInstitute of Transformative Bio-Molecules, Nagoya University, Chikusa, Nagoya, 464-8601, Japan.
Mika NomotoCenter for Gene Research, Nagoya University, Chikusa, Nagoya, 464-8602, Japan.ORCID http://orcid.org/0000-0002-0544-2321
Yasuomi TadaCenter for Gene Research, Nagoya University, Chikusa, Nagoya, 464-8602, Japan.ORCID http://orcid.org/0000-0001-9900-069X
Hidefumi ShinoharaDivision of Biological Science, Graduate School of Science, Nagoya University, Chikusa, Nagoya, 464-8602, Japan.ORCID http://orcid.org/0009-0005-8051-3926
Yoshikatsu MatsubayashiDivision of Biological Science, Graduate School of Science, Nagoya University, Chikusa, Nagoya, 464-8602, Japan. matsu@bio.nagoya-u.ac.jp.ORCID http://orcid.org/0000-0002-2669-2119

Funding

MEXT | Japan Science and Technology Agency (JST) JPMJFS2120MEXT | Japan Society for the Promotion of Science (JSPS) 20H05907MEXT | Japan Society for the Promotion of Science (JSPS) 23H05477
6 · The paper itself

Abstract

Plants initiate specific defense responses by recognizing conserved epitope peptides within the flagellin proteins derived from bacteria. Proteolytic cleavage of epitope peptides from flagellin by plant apoplastic proteases is thought to be crucial for the perception of the epitope by the plant receptor. However, the identity of the plant proteases involved in this process remains unknown. Here, we establish an efficient identification system for the target proteases in Arabidopsis apoplastic fluid; the method employs native two-dimensional electrophoresis followed by an in-gel proteolytic assay using a fluorescence-quenching peptide substrate. We designed a substrate to specifically detect proteolytic activity at the C-terminus of the flg22 epitope in flagellin and identified two plant subtilases, SBT5.2 and SBT1.7, as specific proteases responsible for the C-terminal cleavage of flg22. In the apoplastic fluid of Arabidopsis mutant plants deficient in these two proteases, we observe a decrease in the C-terminal cleavage of the flg22 domain from flagellin, leading to a decrease in the efficiency of flg22 epitope liberation. Consequently, defensive reactive oxygen species (ROS) production is delayed in sbt5.2 sbt1.7 double-mutant leaf disks compared to wild type following flagellin exposure.

Indexed as

ArabidopsisArabidopsis ProteinsEpitopesFlagellinReactive Oxygen SpeciesSubtilisinsMutationProteolysisArabidopsis ProteinsEpitopesFlagellinReactive Oxygen SpeciesSubtilisins

Identifiers

PMID38704378
PMCPMC11069567

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.