Evidence map›Paper›PMID 38701072›Full record

ArticlePloS one2024

PHF2 regulates sarcomeric gene transcription in myogenesis.

Taku Fukushima, Yuka Hasegawa, Sachi Kuse, Taiju Fujioka, Takeshi Nikawa, Satoru Masubuchi, Iori Sakakibara

Abstract read
In one paragraph

Article in PloS one, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Taku FukushimaDepartment of Physiology, School of Medicine, Aichi Medical University, Nagakute, Aichi, Japan.
Yuka HasegawaDepartment of Nutritional Physiology, Institute of Medical Nutrition, Tokushima University Graduate School, Tokushima, Japan.
Sachi KuseDepartment of Nutritional Physiology, Institute of Medical Nutrition, Tokushima University Graduate School, Tokushima, Japan.
Taiju FujiokaDepartment of Physiology, School of Medicine, Aichi Medical University, Nagakute, Aichi, Japan.
Takeshi NikawaDepartment of Nutritional Physiology, Institute of Medical Nutrition, Tokushima University Graduate School, Tokushima, Japan.
Satoru MasubuchiDepartment of Physiology, School of Medicine, Aichi Medical University, Nagakute, Aichi, Japan.ORCID 0000-0003-0377-088X
Iori SakakibaraDepartment of Physiology, School of Medicine, Aichi Medical University, Nagakute, Aichi, Japan.ORCID 0009-0000-8921-7748

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Myogenesis is regulated mainly by transcription factors known as Myogenic Regulatory Factors (MRFs), and the transcription is affected by epigenetic modifications. However, the epigenetic regulation of myogenesis is poorly understood. Here, we focused on the epigenomic modification enzyme, PHF2, which demethylates histone 3 lysine 9 dimethyl (H3K9me2) during myogenesis. Phf2 mRNA was expressed during myogenesis, and PHF2 was localized in the nuclei of myoblasts and myotubes. We generated Phf2 knockout C2C12 myoblasts using the CRISPR/Cas9 system and analyzed global transcriptional changes via RNA-sequencing. Phf2 knockout (KO) cells 2 d post differentiation were subjected to RNA sequencing. Gene ontology (GO) analysis revealed that Phf2 KO impaired the expression of the genes related to skeletal muscle fiber formation and muscle cell development. The expression levels of sarcomeric genes such as Myhs and Mybpc2 were severely reduced in Phf2 KO cells at 7 d post differentiation, and H3K9me2 modification of Mybpc2, Mef2c and Myh7 was increased in Phf2 KO cells at 4 d post differentiation. These findings suggest that PHF2 regulates sarcomeric gene expression via epigenetic modification.

Indexed as

Muscle DevelopmentSarcomeresAnimalsCell DifferentiationCell LineEpigenesis, GeneticGene Knockout TechniquesHistone DemethylasesHistonesHomeodomain ProteinsMEF2 Transcription FactorsMiceMuscle Fibers, SkeletalMyoblastsMyosin Heavy ChainsTranscription FactorsHistone DemethylasesHistonesHomeodomain ProteinsMEF2 Transcription FactorsMyosin Heavy ChainsPHF2 protein, mouseTranscription Factors

Identifiers

PMID38701072
PMCPMC11068198

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.