Evidence map›Paper›PMID 38698087›Full record

ArticleNature immunology2024

Temporal dynamics and genomic programming of plasma cell fates.

Godhev Kumar Manakkat Vijay, Ming Zhou, Kairavee Thakkar, Abigail Rothrauff, Amanpreet Singh Chawla, Dianyu Chen, Louis Chi-Wai Lau, Peter Habib Gerges, Kashish Chetal, Prabal Chhibbar and 7 more

Abstract read
PubMed Publisher
In one paragraph

Article in Nature immunology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors.

Godhev Kumar Manakkat Vijay *Center for Systems Immunology and Department of Immunology, University of Pittsburgh, Pittsburgh, PA, USA.ORCID http://orcid.org/0000-0003-3833-3057
Ming Zhou *Key Laboratory of Growth Regulation and Translational Research of Zhejiang Province, School of Life Sciences, Westlake University, Hangzhou, China.
Kairavee Thakkar *Division of Biomedical Informatics, Cincinnati Children's Hospital and Medical Center, Cincinnati, OH, USA.
Abigail RothrauffCenter for Systems Immunology and Department of Immunology, University of Pittsburgh, Pittsburgh, PA, USA.
Amanpreet Singh ChawlaDivision of Immunobiology, Cincinnati Children's Hospital and Medical Center, Cincinnati, OH, USA.ORCID http://orcid.org/0000-0001-5265-3431
Dianyu ChenKey Laboratory of Growth Regulation and Translational Research of Zhejiang Province, School of Life Sciences, Westlake University, Hangzhou, China.ORCID http://orcid.org/0000-0002-4217-2279
Louis Chi-Wai LauCenter for Systems Immunology and Department of Immunology, University of Pittsburgh, Pittsburgh, PA, USA.
Peter Habib GergesCenter for Systems Immunology and Department of Immunology, University of Pittsburgh, Pittsburgh, PA, USA.
Kashish ChetalDivision of Biomedical Informatics, Cincinnati Children's Hospital and Medical Center, Cincinnati, OH, USA.
Prabal ChhibbarCenter for Systems Immunology and Department of Immunology, University of Pittsburgh, Pittsburgh, PA, USA.
Jingyu FanCenter for Systems Immunology and Department of Immunology, University of Pittsburgh, Pittsburgh, PA, USA.
Jishnu DasCenter for Systems Immunology and Department of Immunology, University of Pittsburgh, Pittsburgh, PA, USA.ORCID http://orcid.org/0000-0002-5747-064X
Alok JoglekarCenter for Systems Immunology and Department of Immunology, University of Pittsburgh, Pittsburgh, PA, USA.ORCID http://orcid.org/0000-0001-7554-7447
Lisa BorghesiCenter for Systems Immunology and Department of Immunology, University of Pittsburgh, Pittsburgh, PA, USA.
Nathan SalomonisDivision of Biomedical Informatics, Cincinnati Children's Hospital and Medical Center, Cincinnati, OH, USA. nathan.salomonis@cchmc.org.ORCID http://orcid.org/0000-0001-9689-2469
Heping XuKey Laboratory of Growth Regulation and Translational Research of Zhejiang Province, School of Life Sciences, Westlake University, Hangzhou, China. xuheping@westlake.edu.cn.ORCID http://orcid.org/0000-0003-2149-7004
Harinder SinghCenter for Systems Immunology and Department of Immunology, University of Pittsburgh, Pittsburgh, PA, USA. harinder@pitt.edu.ORCID http://orcid.org/0000-0002-6330-8526

Funding

Programming Durable Immune Responses To VaccinationU01AI141990 · NIAID · WASHINGTON UNIVERSITY · PI Ali Hassan Ellebedy · 2019 to 2026
$5.3M
B cell population structure in mouse and manR01AI145064 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI SINGH, HARINDER · 2019 to 2022
$1.5M
NIAID NIH HHS R01 AI145064NIAID NIH HHS U01 AI141990
6 · The paper itself

Abstract

Affinity-matured plasma cells (PCs) of varying lifespans are generated through a germinal center (GC) response. The developmental dynamics and genomic programs of antigen-specific PC precursors remain to be elucidated. Here, using a model antigen in mice, we demonstrate biphasic generation of PC precursors, with those generating long-lived bone marrow PCs preferentially produced in the late phase of GC response. Clonal tracing using single-cell RNA sequencing and B cell antigen receptor sequencing in spleen and bone marrow compartments, coupled with adoptive transfer experiments, reveals a new PC transition state that gives rise to functionally competent PC precursors. The latter undergo clonal expansion, dependent on inducible expression of TIGIT. We propose a model for the proliferation and programming of precursors of long-lived PCs, based on extended antigen encounters in the GC.

Indexed as

Cell DifferentiationGerminal CenterPlasma CellsAnimalsMiceMice, Inbred C57BLMice, TransgenicReceptors, Antigen, B-CellReceptors, ImmunologicReceptors, Antigen, B-CellReceptors, Immunologic

Identifiers

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.