Evidence map›Paper›PMID 38698067›Full record

ArticleScientific reports2024

Harnessing eDNA metabarcoding to investigate fish community composition and its seasonal changes in the Oslo fjord.

Cintia Oliveira Carvalho, William Gromstad, Micah Dunthorn, Hans Erik Karlsen, Audun Schrøder-Nielsen, Jonathan Stuart Ready, Torbjørn Haugaasen, Grete Sørnes, Hugo de Boer, Quentin Mauvisseau

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Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Cintia Oliveira Carvalho *Natural History Museum, University of Oslo, Oslo, Norway.
William Gromstad *Natural History Museum, University of Oslo, Oslo, Norway.
Micah DunthornNatural History Museum, University of Oslo, Oslo, Norway.ORCID 0000-0003-1376-4109
Hans Erik KarlsenMarine Research Station Drøbak, University of Oslo, Oslo, Norway.
Audun Schrøder-NielsenNatural History Museum, University of Oslo, Oslo, Norway.
Jonathan Stuart ReadyGroup for Integrated Biological Investigation, Center for Advanced Studies of Biodiversity, Federal University of Pará, Belém, Brazil.ORCID 0000-0002-9374-8661
Torbjørn HaugaasenFaculty of Environmental Sciences and Natural Resource Management, Norwegian University of Life Sciences (NMBU), P.O. Box 5003, 1432, Aas, Norway.
Grete SørnesMarine Research Station Drøbak, University of Oslo, Oslo, Norway.
Hugo de BoerNatural History Museum, University of Oslo, Oslo, Norway.
Quentin MauvisseauNatural History Museum, University of Oslo, Oslo, Norway. quentin.mauvisseau@nhm.uio.no.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In the face of global ecosystem changes driven by anthropogenic activities, effective biomonitoring strategies are crucial for mitigating impacts on vulnerable aquatic habitats. Time series analysis underscores a great significance in understanding the dynamic nature of marine ecosystems, especially amidst climate change disrupting established seasonal patterns. Focusing on Norway's Oslo fjord, our research utilises eDNA-based monitoring for temporal analysis of aquatic biodiversity during a one year period, with bi-monthly sampling along a transect. To increase the robustness of the study, a taxonomic assignment comparing BLAST+ and SINTAX approaches was done. Utilising MiFish and Elas02 primer sets, our study detected 63 unique fish species, including several commercially important species. Our findings reveal a substantial increase in read abundance during specific migratory cycles, highlighting the efficacy of eDNA metabarcoding for fish composition characterization. Seasonal dynamics for certain species exhibit clear patterns, emphasising the method's utility in unravelling ecological complexities. eDNA metabarcoding emerges as a cost-effective tool with considerable potential for fish community monitoring for conservation purposes in dynamic marine environments like the Oslo fjord, contributing valuable insights for informed management strategies.

Indexed as

BiodiversityDNA Barcoding, TaxonomicEstuariesFishesSeasonsAnimalsDNA, EnvironmentalEcosystemEnvironmental MonitoringNorwayDNA, Environmental

Identifiers

PMID38698067
PMCPMC11065990

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.