Evidence map›Paper›PMID 38696386›Full record

ArticlePloS one2024

Characterization of microsatellite markers in the coding regions of the Penaeus vannamei genome.

Iasmim Santos Mangabeira-Silva, Paulo Eduardo Toscano Soares, Yago Tomaz Vieira da Silva, Beatriz Helena Dantas Rodrigues de Albuquerque, Maryana Thalyta Ferreira Câmera de Oliveira, Larissa Alves Honorato Ferreira, Maria Fernanda Bezerra de Souza, Danyllo Vieira de Lucena, Jessica Marina Paiva Pereira, Roseli Pimentel Pinheiro E Silva and 1 more

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Article in PloS one, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Iasmim Santos Mangabeira-SilvaLaboratory of Applied Molecular Biology-LAPLIC, Federal University of Rio Grande do Norte, Natal, RN, Brazil.
Paulo Eduardo Toscano SoaresLaboratory of Applied Molecular Biology-LAPLIC, Federal University of Rio Grande do Norte, Natal, RN, Brazil.ORCID 0000-0002-4159-8569
Yago Tomaz Vieira da SilvaLaboratory of Applied Molecular Biology-LAPLIC, Federal University of Rio Grande do Norte, Natal, RN, Brazil.
Beatriz Helena Dantas Rodrigues de AlbuquerqueLaboratory of Applied Molecular Biology-LAPLIC, Federal University of Rio Grande do Norte, Natal, RN, Brazil.
Maryana Thalyta Ferreira Câmera de OliveiraLaboratory of Applied Molecular Biology-LAPLIC, Federal University of Rio Grande do Norte, Natal, RN, Brazil.
Larissa Alves Honorato FerreiraLaboratory of Applied Molecular Biology-LAPLIC, Federal University of Rio Grande do Norte, Natal, RN, Brazil.
Maria Fernanda Bezerra de SouzaLaboratory of Applied Molecular Biology-LAPLIC, Federal University of Rio Grande do Norte, Natal, RN, Brazil.
Danyllo Vieira de LucenaPostgraduate Program in Civil and Environmental Engineering, Federal University of Campina Grande, Campina Grande, PB, Brazil.
Jessica Marina Paiva PereiraSamaria Unidade de Pós Larvas, Touros, RN, Brazil.
Roseli Pimentel Pinheiro E SilvaSamaria Unidade de Pós Larvas, Touros, RN, Brazil.
Daniel Carlos Ferreira LanzaLaboratory of Applied Molecular Biology-LAPLIC, Federal University of Rio Grande do Norte, Natal, RN, Brazil.ORCID 0000-0002-1341-4814

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In this study, an extensive analysis of microsatellite markers (Single Tandem Repeats-STRs) in Penaeus vannamei was conducted at an advanced level. The markers were thoroughly examined, characterized, and specific markers located within coding regions were identified. Out of a total of 306 STRs, 117 were classified as perfect markers based on their single repeat motif. Among these perfect markers, 62 were found to be associated with predicted coding genes (mRNA), which were involved in various functions such as binding, catalytic activity, ATP-dependent activity, transcription, structural and molecular regulation. To validate the accuracy of the findings, a sample of nine markers was subjected to in vitro testing, which confirmed the presence of polymorphisms within the population. These results suggest the existence of different protein isoforms within the population, indicating the potential of these markers for application in both population and phenotype-genotype association studies. This innovative approach opens up new possibilities for investigating the impact of genomic plasticity in populations of P. vannamei.

Indexed as

Microsatellite RepeatsPenaeidaeAnimalsGenomeOpen Reading FramesPolymorphism, Genetic

Identifiers

PMID38696386
PMCPMC11065258

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.