Evidence map›Paper›PMID 38696375›Full record

ArticlePloS one2024

OpenCell: A low-cost, open-source, 3-in-1 device for DNA extraction.

Aryan Gupta, Justin Yu, Elio J Challita, Janet Standeven, M Saad Bhamla

Abstract read
In one paragraph

Article in PloS one, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Aryan GuptaSchool of Electrical & Computer Engineering, Georgia Institute of Technology, Atlanta, GA, United States of America.ORCID 0009-0002-7347-4533
Justin YuSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, United States of America.
Elio J ChallitaSchool of Chemical & Biomolecular Engineering, Georgia Institute of Technology, Atlanta, GA, United States of America.ORCID 0000-0001-9845-9693
Janet StandevenSchool of Chemical & Biomolecular Engineering, Georgia Institute of Technology, Atlanta, GA, United States of America.ORCID 0000-0003-1256-5298
M Saad BhamlaSchool of Chemical & Biomolecular Engineering, Georgia Institute of Technology, Atlanta, GA, United States of America.ORCID 0000-0002-9788-9920

Funding

Biophysical mechanism and synthetic engineering of optically-controlled Ca2+-powered supramolecular enginesR35GM142588 · NIGMS · UNIVERSITY OF COLORADO · PI SAAD BHAMLA · 2021 to 2026
$4.4M
Frugal Science Academy: Training K-12 innovators and democratizing synthetic biology toolsR25GM142044 · NIGMS · UNIVERSITY OF COLORADO · PI SAAD BHAMLA · 2022 to 2026
$1.3M
NIGMS NIH HHS R25 GM142044NIGMS NIH HHS R35 GM142588
6 · The paper itself

Abstract

High-cost DNA extraction procedures pose significant challenges for budget-constrained laboratories. To address this, we introduce OpenCell, an economical, open-source, 3-in-1 laboratory device that combines the functionalities of a bead homogenizer, a microcentrifuge, and a vortex mixer. OpenCell utilizes modular attachments that magnetically connect to a central rotating brushless motor. This motor couples to an epicyclic gearing mechanism, enabling efficient bead homogenization, vortex mixing, and centrifugation within one compact unit. OpenCell's design incorporates multiple redundant safety features, ensuring both the device's and operator's safety. Additional features such as RPM measurement, programmable timers, battery operation, and optional speed control make OpenCell a reliable and reproducible laboratory instrument. In our study, OpenCell successfully isolated DNA from Spinacia oleracea (spinach), with an average yield of 2.3 μg and an A260/A280 ratio of 1.77, demonstrating its effectiveness for downstream applications such as Polymerase Chain Reaction (PCR) amplification. With its compact size (20 cm x 28 cm x 6.7 cm) and lightweight design (0.8 kg), comparable to the size and weight of a laptop, OpenCell is portable, making it an attractive component of a 'lab-in-a-backpack' for resource-constrained environments in low-and-middle-income countries and synthetic biology in remote field stations. Leveraging the accessibility of 3D printing and off-the-shelf components, OpenCell can be manufactured and assembled at a low unit cost of less than $50, providing an affordable alternative to expensive laboratory equipment costing over $4000. OpenCell aims to overcome the barriers to entry in synthetic biology research and contribute to the growing collection of frugal and open hardware.

Indexed as

DNADNA, PlantEquipment DesignPolymerase Chain ReactionDNADNA, Plant

Identifiers

PMID38696375
PMCPMC11065270

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.