Evidence map›Paper›PMID 38693911›Full record

ArticleMolecular biology and evolution2024

Non-Poissonian Bursts in the Arrival of Phenotypic Variation Can Strongly Affect the Dynamics of Adaptation.

Nora S Martin, Steffen Schaper, Chico Q Camargo, Ard A Louis

Abstract read
In one paragraph

Article in Molecular biology and evolution, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Nora S MartinRudolf Peierls Centre for Theoretical Physics, University of Oxford, Oxford OX1 3PU, UK.ORCID 0000-0003-4026-0985
Steffen SchaperRudolf Peierls Centre for Theoretical Physics, University of Oxford, Oxford OX1 3PU, UK.
Chico Q CamargoRudolf Peierls Centre for Theoretical Physics, University of Oxford, Oxford OX1 3PU, UK.
Ard A LouisRudolf Peierls Centre for Theoretical Physics, University of Oxford, Oxford OX1 3PU, UK.

Funding

Clarendon FundEPSRC EP/G03706X/1German Academic Scholarship Foundation
6 · The paper itself

Abstract

Modeling the rate at which adaptive phenotypes appear in a population is a key to predicting evolutionary processes. Given random mutations, should this rate be modeled by a simple Poisson process, or is a more complex dynamics needed? Here we use analytic calculations and simulations of evolving populations on explicit genotype-phenotype maps to show that the introduction of novel phenotypes can be "bursty" or overdispersed. In other words, a novel phenotype either appears multiple times in quick succession or not at all for many generations. These bursts are fundamentally caused by statistical fluctuations and other structure in the map from genotypes to phenotypes. Their strength depends on population parameters, being highest for "monomorphic" populations with low mutation rates. They can also be enhanced by additional inhomogeneities in the mapping from genotypes to phenotypes. We mainly investigate the effect of bursts using the well-studied genotype-phenotype map for RNA secondary structure, but find similar behavior in a lattice protein model and in Richard Dawkins's biomorphs model of morphological development. Bursts can profoundly affect adaptive dynamics. Most notably, they imply that fitness differences play a smaller role in determining which phenotype fixes than would be the case for a Poisson process without bursts.

Indexed as

Models, GeneticPhenotypeAdaptation, BiologicalAdaptation, PhysiologicalBiological EvolutionComputer SimulationEvolution, MolecularGenotypeMutationPoisson DistributionRNARNAevolutiongenotype–phenotype mappopulation genetics

Identifiers

PMID38693911
PMCPMC11156200

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.