ArticleNature genetics2024
Genomes of multicellular algal sisters to land plants illuminate signaling network evolution.
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Article in Nature genetics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers.
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61citing papers in PubMed
17.8field-weighted citation impact, top 1% of its field
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Who cites it
61 citing papers in PubMed, 82 citations in OpenAlex.
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- A lipid droplet - plasma membrane contact site is conserved across the angiosperm lineage.Protoplasma · 2026Article
- Ecophysiology of the conjugating green algae (Zygnematophyceae) with emphasis on semiterrestrial habitats and specialized metabolic compounds.Protoplasma · 2026Review
- RIFinder reveals widespread adaptive remote introgression in grass genomes.Plant communications · 2026Article
- Systems acclimation to osmotic stress in zygnematophyte cells.Nature communications · 2026Article
1 more citing papers are in PubMed but not listed here.
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Authors and funding
50 authors at 20 institutions in 9 countries.
Xuehuan Feng *Nebraska Food for Health Center, Department of Food Science and Technology, University of Nebraska-Lincoln, Lincoln, NE, USA.
Jinfang Zheng *Nebraska Food for Health Center, Department of Food Science and Technology, University of Nebraska-Lincoln, Lincoln, NE, USA.ORCID http://orcid.org/0000-0001-5966-7713
Iker Irisarri *Institute of Microbiology and Genetics, Department of Applied Bioinformatics, University of Goettingen, Goettingen, Germany.
Huihui YuUniversity of Nebraska-Lincoln, Center for Plant Science Innovation, Lincoln, NE, USA.
Bo ZhengNebraska Food for Health Center, Department of Food Science and Technology, University of Nebraska-Lincoln, Lincoln, NE, USA.
Zahin AliNanyang Technological University, School of Biological Sciences, Singapore, Singapore.
Sophie de VriesInstitute of Microbiology and Genetics, Department of Applied Bioinformatics, University of Goettingen, Goettingen, Germany.ORCID http://orcid.org/0000-0002-5267-8935
Jean KellerLaboratoire de Recherche en Sciences Végétales, Université de Toulouse, CNRS, UPS, INP Toulouse, Castanet-Tolosan, France.
Janine M R Fürst-JansenInstitute of Microbiology and Genetics, Department of Applied Bioinformatics, University of Goettingen, Goettingen, Germany.ORCID http://orcid.org/0000-0002-5269-8725
Armin DadrasInstitute of Microbiology and Genetics, Department of Applied Bioinformatics, University of Goettingen, Goettingen, Germany.ORCID http://orcid.org/0000-0001-7649-2388
Jaccoline M S ZegersInstitute of Microbiology and Genetics, Department of Applied Bioinformatics, University of Goettingen, Goettingen, Germany.
Tim P RiesebergInstitute of Microbiology and Genetics, Department of Applied Bioinformatics, University of Goettingen, Goettingen, Germany.ORCID http://orcid.org/0000-0003-3548-8475
Amra Dhabalia AshokInstitute of Microbiology and Genetics, Department of Applied Bioinformatics, University of Goettingen, Goettingen, Germany.ORCID http://orcid.org/0000-0001-5787-6941
Tatyana DarienkoInstitute of Microbiology and Genetics, Department of Applied Bioinformatics, University of Goettingen, Goettingen, Germany.ORCID http://orcid.org/0000-0002-1957-0076
Maaike J BierenbroodspotInstitute of Microbiology and Genetics, Department of Applied Bioinformatics, University of Goettingen, Goettingen, Germany.ORCID http://orcid.org/0000-0002-4460-3394
Lydia GramzowUniversity of Jena, Matthias Schleiden Institute/Genetics, Jena, Germany.ORCID http://orcid.org/0000-0003-1919-6077
Romy PetrollPlant Cell Biology, Department of Biology, University of Marburg, Marburg, Germany.ORCID http://orcid.org/0000-0003-0165-982X
Fabian B HaasPlant Cell Biology, Department of Biology, University of Marburg, Marburg, Germany.ORCID http://orcid.org/0000-0002-7711-5282
Noe Fernandez-PozoPlant Cell Biology, Department of Biology, University of Marburg, Marburg, Germany.ORCID http://orcid.org/0000-0002-6489-5566
Orestis NousiasNebraska Food for Health Center, Department of Food Science and Technology, University of Nebraska-Lincoln, Lincoln, NE, USA.
Tang LiNebraska Food for Health Center, Department of Food Science and Technology, University of Nebraska-Lincoln, Lincoln, NE, USA.
Elisabeth FitzekComputational Biology, Department of Biology, Center for Biotechnology, Bielefeld University, Bielefeld, Germany.ORCID http://orcid.org/0000-0001-9423-2993
W Scott GrayburnNorthern Illinois University, Molecular Core Lab, Department of Biological Sciences, DeKalb, IL, USA.
Nina RittmeierUniversity of Innsbruck, Department of Botany, Research Group Plant Cell Biology, Innsbruck, Austria.
Charlotte PermannUniversity of Innsbruck, Department of Botany, Research Group Plant Cell Biology, Innsbruck, Austria.
Florian RümplerUniversity of Jena, Matthias Schleiden Institute/Genetics, Jena, Germany.
John M ArchibaldDepartment of Biochemistry and Molecular Biology, Dalhousie University, Halifax, Nova Scotia, Canada.
Günter TheißenUniversity of Jena, Matthias Schleiden Institute/Genetics, Jena, Germany.
Jeffrey P MowerUniversity of Nebraska-Lincoln, Center for Plant Science Innovation, Lincoln, NE, USA.ORCID http://orcid.org/0000-0002-1501-5809
Maike LorenzUniversity of Goettingen, Albrecht-von-Haller-Institute for Plant Sciences, Experimental Phycology and Culture Collection of Algae at Goettingen University, Goettingen, Germany.ORCID http://orcid.org/0000-0002-2277-3077
Henrik BuschmannUniversity of Applied Sciences Mittweida, Faculty of Applied Computer Sciences and Biosciences, Section Biotechnology and Chemistry, Molecular Biotechnology, Mittweida, Germany.
Klaus von SchwartzenbergUniversität Hamburg, Institute of Plant Science and Microbiology, Microalgae and Zygnematophyceae Collection Hamburg and Aquatic Ecophysiology and Phycology, Hamburg, Germany.
Lori BostonGenome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA.
Richard D HayesDepartment of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID http://orcid.org/0000-0002-5236-7918
Chris DaumDepartment of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID http://orcid.org/0000-0003-3895-5892
Kerrie BarryDepartment of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID http://orcid.org/0000-0002-8999-6785
Igor V GrigorievDepartment of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID http://orcid.org/0000-0002-3136-8903
Xiyin WangNorth China University of Science and Technology, Tangshan, China.
Fay-Wei LiBoyce Thompson Institute, Ithaca, NY, USA.ORCID http://orcid.org/0000-0002-0076-0152
Stefan A RensingPlant Cell Biology, Department of Biology, University of Marburg, Marburg, Germany.ORCID http://orcid.org/0000-0002-0225-873X
Julius Ben AriThe Hebrew University of Jerusalem, The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, Rehovot, Israel.
Noa KerenThe Hebrew University of Jerusalem, The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, Rehovot, Israel.ORCID http://orcid.org/0000-0001-7118-8723
Assaf MosqunaThe Hebrew University of Jerusalem, The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, Rehovot, Israel.ORCID http://orcid.org/0000-0003-0467-9287
Andreas HolzingerUniversity of Innsbruck, Department of Botany, Research Group Plant Cell Biology, Innsbruck, Austria.ORCID http://orcid.org/0000-0002-7745-3978
Pierre-Marc DelauxLaboratoire de Recherche en Sciences Végétales, Université de Toulouse, CNRS, UPS, INP Toulouse, Castanet-Tolosan, France.ORCID http://orcid.org/0000-0002-6211-157X
Chi ZhangUniversity of Nebraska-Lincoln, Center for Plant Science Innovation, Lincoln, NE, USA.
Jinling HuangDepartment of Biology, East Carolina University, Greenville, NC, USA.ORCID http://orcid.org/0000-0003-4893-4171
Marek MutwilNanyang Technological University, School of Biological Sciences, Singapore, Singapore.
Jan de Vries *Institute of Microbiology and Genetics, Department of Applied Bioinformatics, University of Goettingen, Goettingen, Germany. devries.jan@uni-goettingen.de.ORCID http://orcid.org/0000-0003-3507-5195
Yanbin Yin *Nebraska Food for Health Center, Department of Food Science and Technology, University of Nebraska-Lincoln, Lincoln, NE, USA. yyin@unl.edu.ORCID http://orcid.org/0000-0001-7667-881X
University of Göttingen · DEUniversity of Nebraska–Lincoln · USLawrence Berkeley National Laboratory · USHebrew University of Jerusalem · ILJena University Hospital · DEPhilipps University of Marburg · DEUniversität Innsbruck · ATCentre National de la Recherche Scientifique · FRNanyang Technological University · SGBielefeld University · DECornell University · USDalhousie University · CAHenan University · CNHochschule Mittweida · DEHudsonAlpha Institute for Biotechnology · USMuseum für Naturkunde · DENorth China University of Science and Technology · CNNorthern Illinois University · USUniversität Hamburg · DEUniversity of Freiburg · DE
Funding
Exploration of cloud computing for CAZyme researchR01GM140370 · NIGMS · UNIVERSITY OF NEBRASKA LINCOLN · PI YIN, YANBIN · 2021 to 2024
$1.5MBioinformatics Discovery of Anti-CRISPR Operons in Human Gut MicrobiomeR21AI171952 · NIAID · UNIVERSITY OF NEBRASKA LINCOLN · PI YIN, YANBIN · 2022 to 2023
$401kAustrian Science Fund (Fonds zur Förderung der Wissenschaftlichen Forschung) P34181-BBill and Melinda Gates Foundation (Bill & Melinda Gates Foundation) OPP1172165Deutsche Forschungsgemeinschaft (German Research Foundation) 410739858Deutsche Forschungsgemeinschaft (German Research Foundation) 440231723Deutsche Forschungsgemeinschaft (German Research Foundation) 440540015Deutsche Forschungsgemeinschaft (German Research Foundation) RE 1697/16-1Deutsche Forschungsgemeinschaft (German Research Foundation) RE 1697/18-1Deutsche Forschungsgemeinschaft (German Research Foundation) TH417/12-1EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 European Research Council (H2020 Excellent Science - European Research Council) 101001675EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 European Research Council (H2020 Excellent Science - European Research Council) 852725Foundation for the National Institutes of Health (Foundation for the National Institutes of Health, Inc.) R01GM140370Foundation for the National Institutes of Health (Foundation for the National Institutes of Health, Inc.) R21AI171952LABoratoires d'EXcellence ARCANE (Labex ARCANE) ANR-10-LABX-41National Science Foundation (NSF) 1933521NIAID NIH HHS R21 AI171952NIGMS NIH HHS R01 GM140370United States Department of Agriculture | Agricultural Research Service (USDA Agricultural Research Service) 58-8042-9-089U.S. Department of Energy (DOE) DE-AC02-05CH11231
Abstract
Zygnematophyceae are the algal sisters of land plants. Here we sequenced four genomes of filamentous Zygnematophyceae, including chromosome-scale assemblies for three strains of Zygnema circumcarinatum. We inferred traits in the ancestor of Zygnematophyceae and land plants that might have ushered in the conquest of land by plants: expanded genes for signaling cascades, environmental response, and multicellular growth. Zygnematophyceae and land plants share all the major enzymes for cell wall synthesis and remodifications, and gene gains shaped this toolkit. Co-expression network analyses uncover gene cohorts that unite environmental signaling with multicellular developmental programs. Our data shed light on a molecular chassis that balances environmental response and growth modulation across more than 600 million years of streptophyte evolution.
Indexed as
EmbryophytaEvolution, MolecularPhylogenySignal TransductionGene Regulatory NetworksGenomeGenome, Plant
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