Evidence map›Paper›PMID 38693276›Full record

ArticleMolecular biology reports2024

Complete mitochondrial genome of critically endangered catfish Hemibagrus punctatus (Jerdon, 1849) and comparative analysis for insights into the phylogeny of hemibagrids through mitogenomic approach.

Labrechai Mog Chowdhury, Divya Pr, Sangeeta Mandal, Charan Ravi, Vindhya Mohindra, U K Sarkar

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Molecular biology reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

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5citing papers in PubMed
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3 · Its place in the literature

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5 citing papers in PubMed.

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5 · Who and what money

Authors and funding

6 authors.

Labrechai Mog ChowdhuryPrincipal Scientist, Centre for PAGR, ICAR NBFGR, Cochin, 682018, India.
Divya PrPrincipal Scientist, Centre for PAGR, ICAR NBFGR, Cochin, 682018, India. divyanbfgr@gmail.com.
Sangeeta MandalPrincipal Scientist, Centre for PAGR, ICAR NBFGR, Cochin, 682018, India.
Charan RaviPrincipal Scientist, Centre for PAGR, ICAR NBFGR, Cochin, 682018, India.
Vindhya MohindraPrincipal Scientist, Centre for PAGR, ICAR NBFGR, Cochin, 682018, India.
U K SarkarPrincipal Scientist, Centre for PAGR, ICAR NBFGR, Cochin, 682018, India.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundHemibagrus punctatus (Jerdon, 1849) is a critically endangered bagrid catfish endemic to the Western Ghats of India, whose population is declining due to anthropogenic activities. The current study aims to compare the mitogenome of H. punctatus with that of other Bagrid catfishes and provide insights into their evolutionary relationships. METHODS AND

resultsSamples were collected from Hemmige Karnataka, India. In the present study, the mitogenome of H. punctatus was successfully assembled, and its phylogenetic relationships with other Bagridae species were studied. The total genomic DNA of samples was extracted following the phenol-chloroform isoamyl alcohol method. Samples were sequenced, and the Illumina paired-end reads were assembled to a contig length of 16,517 bp. The mitochondrial genome was annotated using MitoFish and MitoAnnotator (Iwasaki et al., 2013). A robust phylogenetic analysis employing NJ (Maximum composite likelihood) and ASAP methods supports the classification of H. punctatus within the Bagridae family, which validates the taxonomic status of this species. In conclusion, this research enriches our understanding of H. punctatus mitogenome, shedding light on its evolutionary dynamics within the Bagridae family and contributing to the broader knowledge of mitochondrial genes in the context of evolutionary biology.

conclusionsThe study's findings contribute to a better understanding of the mitogenome of H. punctatus and provide insights into the evolutionary relationships within other Hemibagrids.

Indexed as

CatfishesEndangered SpeciesGenome, MitochondrialPhylogenyAnimalsDNA, MitochondrialEvolution, MolecularIndiaRNA, TransferSequence Analysis, DNADNA, MitochondrialRNA, TransferBagridsH. punctatusMitogenomePhylogeny

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