Evidence map›Paper›PMID 38691600›Full record

ArticleScience advances2024

High-throughput tagging of endogenous loci for rapid characterization of protein function.

Joonwon Kim, Alexander F Kratz, Shiye Chen, Jenny Sheng, Hark Kyun Kim, Liudeng Zhang, Brijesh Kumar Singh, Alejandro Chavez

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. A custom two-in-one HIST and line-scanning confocal excitation module.bioRxiv : the preprint server for biology · 2026
    Article
  3. Review
  4. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Joonwon KimDepartment of Pathology and Cell Biology, Columbia University Irving Medical Center, New York, NY 10032, USA.ORCID 0000-0001-9964-0777
Alexander F KratzDepartment of Pathology and Cell Biology, Columbia University Irving Medical Center, New York, NY 10032, USA.ORCID 0000-0002-7618-0840
Shiye ChenDepartment of Pediatrics, University of California, San Diego, La Jolla, CA 92093, USA.
Jenny ShengDepartment of Pathology and Cell Biology, Columbia University Irving Medical Center, New York, NY 10032, USA.
Hark Kyun KimDepartment of Pediatrics, University of California, San Diego, La Jolla, CA 92093, USA.ORCID 0000-0003-2755-0806
Liudeng ZhangDepartment of Pathology and Cell Biology, Columbia University Irving Medical Center, New York, NY 10032, USA.
Brijesh Kumar SinghDepartment of Pathology and Cell Biology, Columbia University Irving Medical Center, New York, NY 10032, USA.
Alejandro ChavezDepartment of Pathology and Cell Biology, Columbia University Irving Medical Center, New York, NY 10032, USA.ORCID 0000-0001-5626-7140
Columbia University Irving Medical Center · USUniversity of California San Diego · US

Funding

Protein tagging at scale to enable functional genomic studiesR21HG011855 · NHGRI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CHAVEZ, ALEJANDRO · 2021 to 2021
$633k
NHGRI NIH HHS R21 HG011855
6 · The paper itself

Abstract

To facilitate the interrogation of protein function at scale, we have developed high-throughput insertion of tags across the genome (HITAG). HITAG enables users to rapidly produce libraries of cells, each with a different protein of interest C-terminally tagged. HITAG is based on a modified strategy for performing Cas9-based targeted insertions, coupled with an improved approach for selecting properly tagged lines. Analysis of the resulting clones generated by HITAG reveals high tagging specificity, with most successful tagging events being indel free. Using HITAG, we fuse mCherry to a set of 167 stress granule-associated proteins and elucidate the features that drive a subset of proteins to strongly accumulate within these transient RNA-protein granules.

Indexed as

Genetic LociCRISPR-Cas SystemsCytoplasmic GranulesHigh-Throughput Screening AssaysHumansProteinsProteins

Identifiers

PMID38691600
PMCPMC11062585
OpenAlexW4396541862

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.