Evidence map›Paper›PMID 38691576›Full record

ArticleThe Plant cell2024

Arabinosylation of cell wall extensin is required for the directional response to salinity in roots.

Yutao Zou, Nora Gigli-Bisceglia, Eva van Zelm, Pinelopi Kokkinopoulou, Magdalena M Julkowska, Maarten Besten, Thu-Phuong Nguyen, Hongfei Li, Jasper Lamers, Thijs de Zeeuw and 13 more

Open access · hybridAbstract read
In one paragraph

Article in The Plant cell, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
10.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 18 citations in OpenAlex.

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  10. Abscisic acid signaling gates salt-induced responses of plant roots.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 7 institutions in 5 countries.

Yutao ZouLaboratory of Plant Physiology, Wageningen University & Research, 6708 PB Wageningen, the Netherlands.ORCID 0000-0003-3685-5775
Nora Gigli-BiscegliaLaboratory of Plant Physiology, Wageningen University & Research, 6708 PB Wageningen, the Netherlands.ORCID 0000-0002-6907-1427
Eva van ZelmLaboratory of Plant Physiology, Wageningen University & Research, 6708 PB Wageningen, the Netherlands.ORCID 0000-0003-1217-0739
Pinelopi KokkinopoulouLaboratory of Plant Physiology, Wageningen University & Research, 6708 PB Wageningen, the Netherlands.ORCID 0009-0007-5619-0287
Magdalena M JulkowskaBoyce Thompson Institute, Ithaca, NY 14853.ORCID 0000-0002-4259-8296
Maarten BestenLaboratory of Biochemistry, Wageningen University & Research, 6708 WE Wageningen, the Netherlands.ORCID 0000-0001-5823-2320
Thu-Phuong NguyenLaboratory of Genetics, Wageningen University & Research, 6708 PB Wageningen, the Netherlands.ORCID 0000-0003-3492-1062
Hongfei LiLaboratory of Plant Physiology, Wageningen University & Research, 6708 PB Wageningen, the Netherlands.ORCID 0000-0002-6943-9623
Jasper LamersLaboratory of Plant Physiology, Wageningen University & Research, 6708 PB Wageningen, the Netherlands.ORCID 0000-0001-9807-5489
Thijs de ZeeuwLaboratory of Plant Physiology, Wageningen University & Research, 6708 PB Wageningen, the Netherlands.ORCID 0000-0002-1758-0107
Joram A DongusLaboratory of Plant Physiology, Wageningen University & Research, 6708 PB Wageningen, the Netherlands.ORCID 0000-0002-8553-6802
Yuxiao ZengLaboratory of Plant Physiology, Wageningen University & Research, 6708 PB Wageningen, the Netherlands.ORCID 0000-0003-0674-1187
Yu ChengLaboratory of Plant Physiology, Wageningen University & Research, 6708 PB Wageningen, the Netherlands.ORCID 0009-0004-2645-8180
Iko T KoevoetsLaboratory of Plant Physiology, Wageningen University & Research, 6708 PB Wageningen, the Netherlands.ORCID 0000-0002-8973-5518
Bodil JørgensenDepartment of Plant and Environmental Sciences, University of Copenhagen, Frederiksberg C 1871, Denmark.ORCID 0000-0002-0453-1277
Marcel GiesbersWageningen Electron Microscopy Centre, Wageningen University & Research, 6708 PB Wageningen, the Netherlands.ORCID 0009-0007-6437-6364
Jelmer VroomWageningen Electron Microscopy Centre, Wageningen University & Research, 6708 PB Wageningen, the Netherlands.ORCID 0009-0000-1671-6052
Tijs KetelaarLaboratory of Cell Biology, Wageningen University & Research, 6708 PB Wageningen, the Netherlands.ORCID 0000-0001-9506-7264
Bent Larsen PetersenDepartment of Plant and Environmental Sciences, University of Copenhagen, Frederiksberg C 1871, Denmark.ORCID 0000-0002-2004-9077
Timo EngelsdorfMolecular Plant Physiology, Philipps-Universität Marburg, 35043 Marburg, Germany.ORCID 0000-0002-2169-0536
Joris SprakelLaboratory of Biochemistry, Wageningen University & Research, 6708 WE Wageningen, the Netherlands.ORCID 0000-0001-6532-4514
Yanxia ZhangLaboratory of Plant Physiology, Wageningen University & Research, 6708 PB Wageningen, the Netherlands.ORCID 0000-0002-0577-5142
Christa TesterinkLaboratory of Plant Physiology, Wageningen University & Research, 6708 PB Wageningen, the Netherlands.ORCID 0000-0001-6738-115X
Wageningen University & Research · NLUniversity of Amsterdam · NLUniversity of Copenhagen · DKCornell University · USPhilipps University of Marburg · DESouth China Agricultural University · CNUtrecht University · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Soil salinity is a major contributor to crop yield losses. To improve our understanding of root responses to salinity, we developed and exploited a real-time salt-induced tilting assay. This assay follows root growth upon both gravitropic and salt challenges, revealing that root bending upon tilting is modulated by Na+ ions, but not by osmotic stress. Next, we measured this salt-specific response in 345 natural Arabidopsis (Arabidopsis thaliana) accessions and discovered a genetic locus, encoding the cell wall-modifying enzyme EXTENSIN ARABINOSE DEFICIENT TRANSFERASE (ExAD) that is associated with root bending in the presence of NaCl (hereafter salt). Extensins are a class of structural cell wall glycoproteins known as hydroxyproline (Hyp)-rich glycoproteins, which are posttranslationally modified by O-glycosylation, mostly involving Hyp-arabinosylation. We show that salt-induced ExAD-dependent Hyp-arabinosylation influences root bending responses and cell wall thickness. Roots of exad1 mutant seedlings, which lack Hyp-arabinosylation of extensin, displayed increased thickness of root epidermal cell walls and greater cell wall porosity. They also showed altered gravitropic root bending in salt conditions and a reduced salt-avoidance response. Our results suggest that extensin modification via Hyp-arabinosylation is a unique salt-specific cellular process required for the directional response of roots exposed to salinity.

Indexed as

ArabidopsisArabidopsis ProteinsCell WallPlant RootsSalinityArabinoseExostosin Glycosyltransferase FamilyGene Expression Regulation, PlantGlycoproteinsGlycosylationGravitropismPlant ProteinsSodium ChlorideArabidopsis ProteinsArabinoseAt3g57630 protein, ArabidopsisExostosin Glycosyltransferase Familyextensin protein, plantGlycoproteinsPlant ProteinsSodium Chloride

Identifiers

PMID38691576
PMCPMC11371136
OpenAlexW4396542636

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.