Evidence map›Paper›PMID 38691202›Full record

ArticleTropical animal health and production2024

High-throughput DNA sequence analysis elucidates novel insight into the genetic basis of adaptation in local sheep.

Hojjat Asadollahpour Nanaei, Zeinab Amiri Ghanatsaman, Mohammad Ali Farahvashi, Seyedeh Fatemeh Mousavi, Mohammad Hossein Banabazi, Masood Asadi Fozi

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Article in Tropical animal health and production, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

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1citing papers in PubMed
–field-weighted citation impact, top 93% of its field
1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 0 citations in OpenAlex.

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4 · The record

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5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Hojjat Asadollahpour NanaeiDepartment of Animal Science, Faculty of Agriculture, Shahid Bahonar University of Kerman, Kerman, 76169-133, PB, Iran. h.asadollahpour@agr.uk.ac.ir.ORCID http://orcid.org/0000-0002-5220-828X
Zeinab Amiri GhanatsamanAnimal Science Research Department, Fars Agricultural and Natural Resources Research and Education Center, Agricultural Research, Education and Extension Organization (AREEO), Shiraz, Iran.
Mohammad Ali FarahvashiDepartment of Animal Science, Faculty of Agriculture, Shahid Bahonar University of Kerman, Kerman, 76169-133, PB, Iran.
Seyedeh Fatemeh MousaviDepartment of Animal Science, Faculty of Agriculture, University of Kurdistan, Sanandaj, Iran.
Mohammad Hossein BanabaziDepartment of Biotechnology, Animal Science Research Institute of IRAN (ASRI) Agricultural Research, Education & Extension Organization (AREEO), 3146618361, Karaj, Iran.
Masood Asadi FoziDepartment of Animal Science, Faculty of Agriculture, Shahid Bahonar University of Kerman, Kerman, 76169-133, PB, Iran. masadi@uk.ac.ir.
Shahid Bahonar University of Kerman · IRAgricultural Research & Education Organization · IRSwedish University of Agricultural Sciences · SEUniversity of Kurdistan · IR

Funding

Iran National Science Foundation 4006174
6 · The paper itself

Abstract

Understanding how evolutionary factors related to climate adaptation and human selection have influenced the genetic architecture of domesticated animals is of great interest in biology. In the current study, by using 304 whole genomes from different geographical regions (including Europe, north Africa, Southwest Asia, east Asia, west Africa, south Asia, east Africa, Australia and Turkey), We evaluate global sheep population dynamics in terms of genetic variation and population structure. We further conducted comparative population analysis to study the genetic underpinnings of climate adaption to local environments and also morphological traits. In order to identify genomic signals under selection, we applied fixation index (FST) and also nucleotide diversity (θπ) statistical measurements. Our results revealed several candidate genes on different chromosomes under selection for local climate adaptation (e.g. HOXC12, HOXC13, IRF1, FGD2 and GNAQ), body size (PDGFA, HMGA2, PDE3A) and also morphological related traits (RXFP2). The discovered candidate genes may offer newel insights into genetic underpinning of regional adaptation and commercially significant features in local sheep.

Indexed as

Sheep, DomesticAdaptation, PhysiologicalAnimalsGenetic VariationHigh-Throughput Nucleotide SequencingSelection, GeneticSequence Analysis, DNASheepCandidate geneGenetic variationLocal adaptationSheepWhole genome

Identifiers

PMID38691202
OpenAlexW4396546654

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.